Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 3.6e-228 794.7 420 100.0
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.7e-137 493.4 356 67.1
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 5.4e-136 488.4 358 67.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.0e-134 484.2 360 65.8
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.8e-134 483.4 360 66.4
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 4.0e-131 472.2 361 64.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 5.3e-131 471.9 358 64.2
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 5.3e-131 471.9 375 61.9
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 9.0e-131 471.1 360 66.1
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 9.0e-131 471.1 360 65.6
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-130 470.7 332 68.1
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 3.4e-130 469.2 332 68.4
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 7.6e-130 468.0 352 65.1
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.7e-129 466.8 354 64.4
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.9e-129 466.1 337 67.4
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.4e-129 464.9 359 64.3
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.4e-128 463.8 359 64.1
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.9e-128 463.4 359 64.1
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.9e-128 463.4 360 64.2
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.4e-128 463.0 358 64.2
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.2e-128 462.2 359 63.8
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 4.2e-128 462.2 328 68.3
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 9.3e-128 461.1 361 62.9
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.7e-127 459.5 356 63.8
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.7e-127 459.5 360 64.7
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 4.6e-127 458.8 329 66.6
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.0e-127 458.4 371 62.3
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.0e-126 457.6 347 64.8
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.3e-126 456.4 361 62.0
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 2.3e-126 456.4 361 64.0
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 3.9e-126 455.7 360 64.2
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 5.1e-126 455.3 329 65.0
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.7e-126 454.5 356 63.5
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 1.9e-125 453.4 356 61.8
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 2.5e-125 453.0 352 63.1
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.3e-125 452.2 356 64.0
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 5.6e-125 451.8 366 62.6
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 9.6e-125 451.1 336 65.5
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.8e-124 448.7 333 66.4
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 6.2e-124 448.4 332 65.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 1.1e-123 447.6 359 62.1
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.1e-123 447.6 330 66.7
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.4e-123 447.2 370 61.1
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 5.3e-123 445.3 362 61.6
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 5.3e-123 445.3 355 62.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 6.9e-123 444.9 349 63.3
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.9e-123 444.9 329 66.3
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 9.0e-123 444.5 354 63.6
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 2.0e-122 443.4 313 68.1
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 2.6e-122 443.0 375 61.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.6e-122 443.0 360 59.2
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 2.2e-121 439.9 357 60.2
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.9e-121 439.5 356 60.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 2.9e-121 439.5 337 65.3
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.9e-121 439.5 348 62.6
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 8.4e-121 438.0 312 67.0
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.1e-120 437.6 333 64.6
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.1e-120 437.6 355 61.4
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.9e-120 436.8 337 65.0
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 5.5e-120 435.3 395 58.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 5.5e-120 435.3 330 63.0
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.6e-119 433.7 355 61.1
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.6e-119 433.7 359 59.3
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.1e-119 433.3 366 60.7
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.1e-119 433.3 332 62.0
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.6e-119 432.2 370 60.0
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 7.9e-119 431.4 358 60.6
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 7.9e-119 431.4 358 60.6
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 7.9e-119 431.4 356 60.4
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 7.9e-119 431.4 374 59.1
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 7.9e-119 431.4 374 59.1
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.0e-118 429.5 360 58.1
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 3.9e-118 429.1 355 61.1
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 3.9e-118 429.1 358 60.6
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 5.1e-118 428.7 357 60.2
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 5.1e-118 428.7 360 60.0
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 8.7e-118 427.9 355 59.2
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 8.7e-118 427.9 326 61.7
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.1e-117 427.6 357 59.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-117 427.2 356 61.2
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.5e-117 427.2 332 62.0
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 1.9e-117 426.8 363 59.5
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 2.5e-117 426.4 333 61.6
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 4.3e-117 425.6 334 62.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 4.3e-117 425.6 361 57.9
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 2.8e-116 422.9 351 59.8
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 2.8e-116 422.9 328 62.2
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 6.3e-116 421.8 354 58.2
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-115 421.0 353 59.8
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.4e-115 419.9 353 59.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 2.4e-115 419.9 354 58.8
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.4e-115 419.9 294 68.7
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 3.1e-115 419.5 353 60.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.3e-115 418.7 340 60.6
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 6.9e-115 418.3 313 63.9
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 6.9e-115 418.3 332 61.4
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-114 417.5 340 60.3
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.2e-114 417.5 354 59.3
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.5e-114 417.2 361 57.3
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-114 416.8 349 60.5
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 2.0e-114 416.8 321 62.9
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 3.4e-114 416.0 333 60.7
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 3.4e-114 416.0 325 62.5
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.0e-113 414.5 340 61.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 1.4e-112 410.6 385 55.6
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.2e-111 407.5 362 56.6
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.0e-110 404.4 354 57.1
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.3e-110 404.1 338 59.2
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-109 400.6 358 58.1
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.4e-109 398.3 313 65.5
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 8.2e-108 394.8 363 55.4
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.6e-103 379.4 359 57.4
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.9e-102 375.9 317 60.3
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.8e-102 374.8 344 56.7
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.6e-101 373.2 346 53.8
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.3e-100 370.9 331 56.8
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.1e-99 366.3 333 55.0
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 6.1e-95 352.1 334 51.5
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.4e-94 350.9 275 62.9
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.0e-94 349.7 361 52.1
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.5e-93 347.4 370 49.7
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 7.0e-91 338.6 262 62.6
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 2.5e-88 330.1 264 59.1
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.2e-88 329.3 300 56.3
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 4.5e-82 309.3 364 45.9
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 4.5e-82 309.3 257 61.9
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.0e-78 298.1 267 58.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.3e-78 297.0 266 55.3
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 3.0e-78 296.6 347 45.8
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.2e-77 294.7 360 44.4
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.5e-77 292.0 264 56.8
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.4e-70 271.2 268 53.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.4e-69 266.5 348 45.7
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 5.9e-66 255.8 181 66.9
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.8e-65 253.1 232 56.9
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.8e-62 244.2 332 44.9
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.6e-50 204.5 283 41.0
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 7.3e-48 195.7 140 68.6
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.5e-45 188.0 348 35.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.9e-44 183.7 167 54.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 4.1e-43 179.9 333 36.6
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 4.1e-43 179.9 333 36.6
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 5.4e-43 179.5 293 38.6
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 4.7e-39 166.4 351 34.5
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.4e-38 164.1 158 53.8
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.8e-37 159.5 204 43.6
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.4e-22 111.7 365 25.5
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.2e-21 108.6 193 31.6
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.9e-20 104.0 124 46.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.3e-17 95.1 182 33.0
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 8.1e-15 85.9 87 51.7
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 8.1e-15 85.9 87 51.7
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.3e-14 83.2 53 71.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.9e-12 77.4 77 51.9
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 4.2e-11 73.6 75 49.3


User provided reference genes

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