Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 0.0e+00 1098.6 550 100.0
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.3e-211 739.2 557 68.4
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 2.2e-206 722.6 556 67.8
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.7e-204 714.9 560 67.3
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.8e-203 713.0 559 67.1
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.8e-203 713.0 552 67.0
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 5.9e-199 698.0 555 67.4
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.1e-197 693.7 555 66.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.9e-197 693.0 558 66.1
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 4.7e-196 688.3 556 65.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.4e-195 686.8 563 65.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.4e-195 686.8 558 65.4
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.0e-195 685.6 562 66.0
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.0e-195 685.6 557 64.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.7e-194 681.4 554 65.7
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.3e-193 680.2 557 65.5
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.2e-193 679.5 559 66.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 4.9e-193 678.3 559 66.0
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.3e-193 677.9 559 66.2
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.4e-192 676.8 560 65.9
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.8e-192 676.4 563 63.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 5.4e-192 674.9 555 65.8
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 2.7e-191 672.5 559 65.7
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.7e-191 672.5 555 65.0
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.7e-190 669.8 559 65.5
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.3e-190 669.5 555 64.7
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.9e-190 669.1 559 65.3
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.5e-189 666.0 609 59.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 7.3e-189 664.5 523 67.1
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 9.5e-189 664.1 562 62.6
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.8e-188 662.5 557 64.6
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.8e-188 662.5 555 65.0
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.6e-188 662.1 564 63.7
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.1e-188 661.4 551 65.5
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 5.2e-187 658.3 556 63.5
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.2e-187 658.3 557 63.4
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 6.8e-187 657.9 571 63.0
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.4e-184 650.2 558 62.9
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.4e-184 649.4 558 63.1
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.2e-184 649.0 564 62.6
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 7.0e-184 647.9 554 64.1
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.6e-183 646.7 554 63.2
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 3.5e-183 645.6 554 64.6
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.6e-182 641.0 563 63.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.5e-181 639.4 554 63.9
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.3e-181 639.0 560 62.9
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.3e-181 638.6 554 64.3
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.6e-180 636.7 573 62.1
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.1e-180 636.3 566 61.1
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.1e-179 632.5 560 62.1
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 7.5e-178 627.9 562 61.7
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 8.3e-177 624.4 560 62.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.1e-176 624.0 556 62.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.4e-176 623.6 638 56.6
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 5.4e-176 621.7 559 62.1
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.3e-174 617.1 619 59.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.3e-173 612.5 592 57.9
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.3e-173 612.1 560 60.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 9.5e-173 610.9 563 61.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.8e-172 609.4 557 60.9
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 8.1e-172 607.8 559 61.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.4e-171 607.1 583 58.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.0e-171 605.5 566 60.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 5.2e-171 605.1 563 60.0
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 6.8e-171 604.7 539 60.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 8.9e-171 604.4 557 61.9
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 3.4e-170 602.4 562 60.3
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.5e-170 601.3 583 58.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.9e-169 599.4 556 59.0
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 4.1e-168 595.5 558 60.4
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.1e-168 595.5 537 61.3
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 7.1e-168 594.7 559 60.5
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.3e-166 590.5 563 59.0
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.3e-165 585.9 696 50.3
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.8e-163 580.1 545 59.8
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 8.9e-163 577.8 572 57.9
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.2e-162 577.4 588 55.3
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.0e-162 576.6 520 62.5
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.6e-162 576.2 695 49.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.2e-160 569.3 564 58.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 5.4e-160 568.5 569 57.1
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.6e-159 567.0 572 57.7
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 3.5e-159 565.8 472 64.0
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 3.3e-157 559.3 568 56.7
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.1e-155 554.3 575 57.0
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 3.1e-155 552.7 565 57.3
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 6.9e-155 551.6 562 57.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.2e-154 550.8 579 55.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 3.4e-154 549.3 472 63.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 7.6e-154 548.1 575 55.7
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.3e-153 547.4 574 55.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 2.2e-153 546.6 641 52.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 3.8e-153 545.8 573 55.1
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 8.4e-153 544.7 578 55.9
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.4e-152 543.9 576 55.9
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 2.0e-146 523.5 556 54.0
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 9.9e-146 521.2 563 53.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.8e-145 519.2 455 61.3
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.6e-143 513.8 522 56.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 3.9e-142 509.2 578 54.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 6.7e-142 508.4 557 54.0
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.5e-141 507.3 581 54.4
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.5e-141 507.3 581 54.4
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.9e-141 506.9 578 54.2
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.3e-141 506.1 581 53.9
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.5e-133 480.7 414 63.0
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.8e-129 466.1 563 49.6
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.2e-128 463.0 571 49.9
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.6e-122 443.4 554 48.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.3e-121 441.0 587 46.5
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 5.0e-121 439.1 561 50.6
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.2e-120 436.0 419 60.4
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 3.3e-117 426.4 396 57.6
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.5e-114 417.5 556 46.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.3e-97 361.3 556 42.6
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.6e-90 337.8 556 41.4
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.3e-89 334.7 295 62.0
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 2.8e-76 290.4 501 40.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.5e-72 277.3 356 45.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 5.2e-70 269.6 314 51.3
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.3e-54 217.6 473 37.0
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 7.5e-53 212.6 264 44.7
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.9e-35 154.8 167 57.5
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.4e-27 127.9 88 71.6
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.6e-23 115.2 86 68.6
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.9e-19 101.7 109 54.1
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 4.2e-19 100.5 86 58.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.5e-18 97.4 205 29.3
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 5.7e-16 90.1 231 31.2
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 5.7e-16 90.1 70 67.1
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.8e-15 87.0 197 30.5
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.0e-14 82.8 194 29.4
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.2e-12 78.2 357 25.8
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.2e-07 61.6 60 56.7


User provided reference genes

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