Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 3.3e-144 515.0 257 100.0
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.3e-127 459.9 250 91.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.6e-74 282.3 238 64.3
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.4e-73 280.4 238 64.7
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.3e-73 279.6 238 64.7
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.2e-72 277.3 238 63.0
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.0e-72 276.6 238 63.4
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 4.4e-72 275.4 241 62.2
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.7e-71 273.5 249 60.6
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 2.2e-71 273.1 243 61.3
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.9e-71 272.7 240 62.5
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.9e-70 270.0 236 62.7
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.2e-69 267.3 238 61.3
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 7.8e-69 264.6 228 64.0
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 1.1e-67 260.8 241 57.7
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.5e-67 260.4 232 60.8
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.5e-67 260.4 240 59.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.9e-67 260.0 228 61.4
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 2.5e-67 259.6 237 61.6
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 5.6e-67 258.5 246 58.1
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 7.3e-67 258.1 233 60.1
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 1.2e-66 257.3 233 60.5
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.1e-66 256.5 233 60.1
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 4.7e-66 255.4 245 56.3
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.8e-65 253.4 238 59.2
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 5.2e-65 251.9 228 62.7
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 5.2e-65 251.9 227 62.6
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 5.2e-65 251.9 235 60.9
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 8.9e-65 251.1 245 58.8
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 8.9e-65 251.1 231 61.5
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 2.2e-63 246.5 237 59.5
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 2.9e-63 246.1 239 59.0
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 4.9e-63 245.4 242 56.6
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 4.9e-63 245.4 233 58.4
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 4.2e-62 242.3 254 55.5
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.7e-60 236.9 228 58.3
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.7e-60 236.9 237 56.5
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 2.3e-60 236.5 236 57.2
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 5.1e-60 235.3 228 58.8
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 6.6e-60 235.0 227 59.5
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.6e-60 235.0 227 59.9
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.6e-60 235.0 227 59.9
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 8.7e-60 234.6 242 56.6
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 1.9e-59 233.4 249 52.2
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 4.3e-59 232.3 260 51.9
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 4.3e-59 232.3 237 55.7
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 7.3e-59 231.5 227 58.6
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 2.8e-58 229.6 233 57.1
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.6e-58 229.2 227 58.6
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 8.1e-58 228.0 227 55.9
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.4e-57 227.3 223 57.4
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 1.4e-57 227.3 227 57.3
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.1e-57 226.1 238 55.5
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.0e-57 225.7 227 56.8
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 5.3e-57 225.3 230 53.9
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 9.0e-57 224.6 233 56.7
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 4.5e-56 222.2 234 56.8
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 4.5e-56 222.2 236 54.7
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 7.6e-56 221.5 229 55.9
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 7.6e-56 221.5 231 54.1
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 1.3e-55 220.7 225 54.2
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 1.7e-55 220.3 227 55.1
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 2.9e-55 219.5 226 55.8
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 4.9e-55 218.8 237 54.0
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 6.4e-55 218.4 223 56.1
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 8.4e-55 218.0 234 53.0
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.9e-54 216.9 214 57.9
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.2e-53 214.2 235 54.0
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.6e-53 213.8 226 54.4
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.7e-53 213.0 213 59.6
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 6.0e-53 211.8 242 52.5
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 8.7e-52 208.0 226 52.2
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.9e-51 206.8 224 54.0
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 1.9e-51 206.8 233 52.4
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.5e-51 206.5 228 53.1
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 4.3e-51 205.7 226 53.5
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 5.6e-51 205.3 233 51.9
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 4.0e-49 199.1 226 51.3
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 4.0e-49 199.1 226 51.3
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 9.0e-49 198.0 226 51.3
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 2.6e-48 196.4 228 51.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 3.4e-48 196.1 228 52.2
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 6.4e-47 191.8 225 49.3
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 8.4e-47 191.4 230 49.1
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.4e-46 190.7 162 62.3
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 2.4e-46 189.9 231 47.2
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 5.5e-46 188.7 230 48.3
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 1.2e-45 187.6 187 56.7
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 6.0e-45 185.3 238 50.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 7.9e-45 184.9 228 49.1
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.9e-43 180.3 240 48.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.9e-43 180.3 240 48.8
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 2.5e-43 179.9 232 47.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 4.3e-43 179.1 242 48.3
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 5.6e-43 178.7 242 48.3
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 5.6e-43 178.7 231 50.6
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 7.4e-43 178.3 185 54.1
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.3e-42 177.6 233 48.5
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 3.7e-42 176.0 232 47.8
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 5.3e-41 172.2 242 48.8
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 5.8e-40 168.7 241 44.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.7e-39 167.2 243 46.1
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 1.4e-38 164.1 327 38.8
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-38 161.8 196 52.6
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-38 161.8 197 53.3
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 7.1e-38 161.8 197 53.3
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 9.3e-38 161.4 120 68.3
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.2e-37 161.0 231 48.1
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 3.5e-37 159.5 197 52.8
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 7.9e-37 158.3 204 49.0
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.0e-36 157.9 169 50.9
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 8.2e-34 148.3 89 84.3
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 7.9e-29 131.7 95 68.4
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 2.2e-26 123.6 160 48.1
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 3.7e-26 122.9 187 45.5
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 6.9e-25 118.6 149 46.3
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 2.2e-23 113.6 72 79.2
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.9e-22 110.5 73 78.1
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 1.9e-22 110.5 158 43.7
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 2.2e-18 97.1 72 66.7
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 2.8e-18 96.7 215 35.8
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 1.1e-17 94.7 210 35.2
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 5.3e-17 92.4 58 79.3
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 3.8e-15 86.3 229 31.4
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 6.5e-15 85.5 155 37.4
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 4.2e-14 82.8 56 78.6
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.7e-13 79.3 63 61.9
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 3.9e-12 76.3 115 42.6
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 2.8e-10 70.1 118 38.1
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 2.4e-09 67.0 76 47.4


User provided reference genes

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