Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.8e-191 671.8 344 100.0
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.8e-84 315.1 425 47.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.3e-76 290.0 495 40.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 7.0e-73 278.5 494 39.3
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.9e-72 275.4 496 38.7
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 2.3e-71 273.5 496 38.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.9e-71 273.1 494 39.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 6.6e-71 271.9 502 38.8
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 8.6e-71 271.6 501 38.7
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.4e-68 264.2 495 37.0
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.8e-68 263.8 529 38.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.8e-68 263.8 495 37.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-68 263.1 486 38.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 5.2e-68 262.3 487 38.2
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 6.8e-68 261.9 495 36.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 8.9e-68 261.5 486 37.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.2e-67 261.2 480 37.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 5.7e-67 258.8 480 37.3
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 5.7e-67 258.8 483 37.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 9.8e-67 258.1 495 36.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.3e-66 257.7 465 37.6
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.2e-66 256.9 244 56.6
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 8.3e-66 255.0 495 36.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 1.4e-65 254.2 491 37.1
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.8e-65 253.8 486 38.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 5.4e-65 252.3 492 37.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.2e-64 251.1 497 35.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-64 251.1 499 36.5
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.2e-64 251.1 397 39.3
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.6e-64 250.8 485 37.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 2.0e-64 250.4 495 37.0
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.5e-64 249.6 487 37.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.7e-63 247.3 411 39.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.0e-63 246.5 495 36.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.0e-63 246.5 495 36.4
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.6e-63 245.0 243 54.7
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.1e-62 244.6 490 36.9
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-62 244.6 495 36.0
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-62 244.6 493 35.7
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.1e-62 244.6 497 36.2
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.9e-62 243.8 496 37.1
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.3e-62 243.0 492 35.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.3e-62 242.7 497 35.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.3e-62 242.7 495 36.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.3e-62 242.7 486 36.4
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 7.3e-62 241.9 482 36.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.3e-62 241.9 489 36.6
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.3e-62 241.9 489 36.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.3e-62 241.9 495 36.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.5e-62 241.5 489 36.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.8e-61 240.0 495 36.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-61 238.8 489 36.4
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 8.0e-61 238.4 491 35.4
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.0e-60 238.0 489 35.4
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.4e-60 237.7 238 53.8
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.8e-60 237.3 245 51.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.4e-59 233.0 243 53.1
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.4e-59 233.0 529 34.6
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.4e-59 233.0 487 34.9
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 4.4e-59 232.6 507 35.1
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.8e-59 231.5 239 53.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.3e-58 231.1 485 36.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.2e-58 230.3 491 35.2
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 4.9e-58 229.2 475 34.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 4.9e-58 229.2 238 52.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.9e-57 227.3 489 35.2
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.7e-56 223.4 457 37.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.7e-55 220.7 245 51.8
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.7e-55 220.7 447 36.5
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.6e-55 218.8 244 50.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.5e-54 217.6 233 51.1
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 7.3e-54 215.3 244 50.8
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.5e-51 207.6 470 33.4
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.4e-51 206.5 230 48.7
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.8e-51 205.7 230 49.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.1e-47 192.6 452 33.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.6e-45 186.4 183 55.7
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.4e-44 184.5 455 31.0
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 3.1e-44 183.3 230 46.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-43 181.0 237 45.6
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-42 176.8 253 42.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 3.0e-39 166.8 376 36.7
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 3.3e-38 163.3 429 32.9
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.1e-37 160.6 261 42.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 8.4e-34 148.7 229 42.4
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.5e-30 137.1 325 34.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-28 131.0 228 37.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.0e-28 129.8 231 38.1
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.3e-28 129.4 241 36.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.9e-28 129.0 238 37.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.6e-27 127.1 221 37.6
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.5e-27 126.3 237 36.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 4.5e-27 126.3 252 34.9
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 5.8e-27 125.9 189 43.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-26 124.8 261 32.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.7e-26 124.4 231 36.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.2e-26 124.0 200 40.0
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.9e-26 123.6 268 33.6
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-25 121.7 260 32.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.9e-25 120.9 237 35.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.2e-25 119.8 239 33.9
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.2e-25 119.8 266 32.3
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.2e-25 119.8 237 35.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.4e-25 119.4 262 32.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-24 117.9 266 32.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.3e-23 114.0 243 36.2
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.3e-23 114.0 238 32.8
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 3.0e-23 113.6 243 36.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-22 111.7 276 31.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 4.3e-22 109.8 267 32.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.6e-22 109.4 240 33.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.4e-22 109.0 231 34.6
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-21 107.8 236 34.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.1e-21 107.5 242 32.6
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 4.8e-21 106.3 270 31.5
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 6.2e-21 105.9 250 33.2
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-21 105.9 234 35.9
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 6.2e-21 105.9 250 33.2
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 6.2e-21 105.9 236 33.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 6.2e-21 105.9 251 32.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.1e-21 105.5 263 30.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-20 105.1 236 36.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-20 104.4 236 33.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.4e-20 104.0 276 29.0
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 5.3e-20 102.8 237 36.3
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 5.3e-20 102.8 328 29.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 6.9e-20 102.4 234 35.9
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.2e-18 97.4 240 34.2
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.8e-18 96.7 243 32.9
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-17 94.7 253 31.2
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.4e-17 94.7 140 41.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-17 94.4 238 31.5
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 4.2e-17 93.2 132 40.2
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.9e-16 89.0 147 37.4
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 7.9e-16 89.0 202 35.6
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.9e-16 89.0 128 42.2
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 8.1e-13 79.0 143 37.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-12 78.6 125 36.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 6.9e-12 75.9 58 62.1
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.8e-11 72.8 170 32.9
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 2.2e-10 70.9 55 63.6
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 7.1e-09 65.9 160 33.1
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.7e-08 63.9 58 56.9
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 7.9e-08 62.4 59 52.5
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-07 62.0 81 42.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.8e-07 61.2 158 34.2
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 3.9e-07 60.1 61 50.8
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.5e-06 58.2 161 28.6
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 4.3e-06 56.6 95 38.9


User provided reference genes

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