Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.5e-234 815.8 423 100.0
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 8.0e-103 378.3 424 54.2
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.1e-99 366.3 419 49.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 7.5e-93 345.1 429 45.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 4.9e-92 342.4 430 47.9
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 6.3e-92 342.0 412 46.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 5.4e-91 339.0 429 47.1
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.5e-90 335.9 429 46.4
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.9e-89 333.2 419 49.2
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.0e-86 324.7 442 45.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 5.2e-86 322.4 433 45.5
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 8.9e-86 321.6 410 45.1
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.5e-85 320.9 416 45.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.0e-85 320.5 410 45.4
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 4.4e-85 319.3 411 45.3
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 4.1e-83 312.8 407 45.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 5.4e-83 312.4 434 44.5
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.0e-81 308.1 362 51.7
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 3.3e-80 303.1 361 48.2
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.1e-78 298.1 412 44.4
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.3e-78 297.0 383 46.2
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.3e-78 297.0 419 43.7
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.0e-77 293.9 451 41.5
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.4e-77 293.1 427 43.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 3.4e-77 293.1 417 42.7
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 5.8e-77 292.4 351 48.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 7.5e-77 292.0 431 43.6
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.7e-76 290.8 423 42.1
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.9e-76 290.0 426 41.5
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.3e-76 288.5 409 43.3
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.1e-75 288.1 409 43.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.4e-75 287.7 409 43.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.4e-75 287.0 409 43.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 7.0e-75 285.4 409 43.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-74 284.3 409 42.5
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.5e-74 283.1 361 45.7
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.6e-74 282.7 361 45.4
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.0e-74 282.3 361 45.7
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 7.8e-74 282.0 423 41.6
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.8e-74 282.0 442 40.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.7e-73 280.8 431 42.2
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.7e-73 280.8 360 45.8
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.7e-73 280.8 436 42.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 3.3e-72 276.6 409 41.6
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 4.3e-72 276.2 407 41.8
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 4.3e-72 276.2 429 41.5
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-71 274.2 409 41.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 4.7e-71 272.7 436 42.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 8.1e-71 271.9 427 41.9
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 3.1e-70 270.0 436 40.6
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 5.2e-70 269.2 397 42.8
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 5.2e-70 269.2 393 41.2
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 6.8e-70 268.9 319 48.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.2e-69 268.1 412 39.3
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 9.9e-69 265.0 431 44.3
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.2e-68 263.8 393 42.2
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.2e-68 263.8 353 43.6
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 2.2e-68 263.8 411 40.1
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.9e-68 263.5 366 42.9
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.1e-67 261.5 380 43.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.2e-67 260.0 429 43.4
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 4.6e-66 256.1 384 41.1
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.0e-65 255.0 410 40.0
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 5.1e-65 252.7 430 38.1
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 8.6e-65 251.9 470 35.7
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.1e-64 251.5 412 39.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-64 250.8 339 45.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.5e-64 250.4 434 42.9
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.5e-64 250.4 400 39.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 4.3e-64 249.6 371 46.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 7.3e-64 248.8 409 39.4
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 6.2e-63 245.7 369 41.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 6.2e-63 245.7 431 38.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.4e-62 244.6 425 37.4
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 8.9e-62 241.9 430 37.2
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.9e-62 241.9 405 38.3
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.4e-61 240.0 430 37.0
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.4e-61 240.0 424 38.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 5.8e-61 239.2 361 39.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.6e-61 238.8 421 38.5
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.3e-60 238.0 414 36.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 6.4e-60 235.7 407 36.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.9e-59 234.2 399 36.6
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 4.2e-59 233.0 403 37.0
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 9.2e-59 231.9 383 39.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-58 231.5 403 36.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.7e-58 230.3 436 36.9
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 4.6e-58 229.6 359 40.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.6e-58 229.6 359 40.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.6e-57 225.7 402 37.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 6.6e-57 225.7 405 36.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 6.6e-57 225.7 405 36.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 6.6e-57 225.7 425 35.5
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.8e-55 220.3 405 36.3
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.8e-55 220.3 404 37.4
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.6e-55 219.9 422 36.3
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.7e-55 219.5 423 36.4
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-54 218.4 372 36.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.8e-54 217.6 361 38.8
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 4.0e-54 216.5 410 36.6
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 6.9e-54 215.7 385 38.7
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.5e-53 214.5 429 34.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.0e-53 214.2 428 34.3
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.6e-53 213.8 380 36.3
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.6e-53 213.8 436 35.6
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 3.4e-53 213.4 350 37.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.8e-53 212.6 369 37.9
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.8e-53 212.6 369 37.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.1e-51 208.4 402 34.1
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.4e-51 207.2 442 34.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 6.0e-50 202.6 401 33.9
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.0e-50 202.6 260 46.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 8.7e-49 198.7 400 34.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.5e-48 198.0 444 34.0
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.5e-48 197.2 405 34.3
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.5e-48 197.2 426 33.8
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.4e-46 191.4 358 34.4
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 4.5e-45 186.4 211 49.8
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 9.9e-45 185.3 411 32.1
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 7.1e-43 179.1 379 32.7
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.7e-42 177.2 303 37.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.9e-42 175.6 287 38.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.9e-41 173.3 353 35.1
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 9.6e-40 168.7 344 33.7
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 4.0e-38 163.3 402 35.8
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-37 161.8 407 33.4
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 9.3e-35 152.1 401 32.2
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 3.9e-33 146.7 370 31.9
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.5e-32 144.8 289 39.1
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 8.2e-31 139.0 170 44.1
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 9.0e-30 135.6 231 35.9
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 4.5e-29 133.3 427 29.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 4.2e-27 126.7 209 36.4
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 7.9e-26 122.5 196 37.8
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.6e-23 114.8 154 41.6
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.6e-23 114.8 154 41.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.8e-23 114.0 154 41.6
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.8e-23 114.0 154 41.6
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-22 112.1 145 43.4
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-21 108.2 242 35.1
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.6e-18 97.1 421 25.4
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.0e-13 81.3 128 39.8
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.6e-13 80.9 85 50.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 1.0e-09 68.9 269 27.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 3.0e-09 67.4 58 53.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.9e-09 67.0 128 36.7
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-08 65.1 58 62.1
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.5e-08 65.1 191 27.7
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 9.7e-08 62.4 129 34.1
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 3.7e-07 60.5 70 44.3
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.7e-07 60.5 70 44.3
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-06 58.5 67 46.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-06 58.5 67 46.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-06 58.5 67 46.3
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.8e-06 58.2 81 39.5
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 5.3e-06 56.6 55 49.1


User provided reference genes

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