Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 7.6e-83 310.5 158 100.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.8e-60 236.1 158 72.8
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 5.3e-60 234.6 157 72.0
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 7.0e-60 234.2 158 72.8
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.2e-59 233.4 159 75.5
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.6e-59 233.0 156 74.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.6e-59 233.0 158 74.1
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 2.6e-59 232.3 158 74.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.6e-59 232.3 158 75.3
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-58 230.3 158 73.4
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.7e-58 229.6 158 75.3
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 2.2e-58 229.2 158 70.3
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-58 228.8 158 73.4
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-58 228.8 158 73.4
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.5e-58 227.6 158 72.8
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 6.5e-58 227.6 157 71.3
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 8.5e-58 227.3 158 72.2
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.5e-58 227.3 158 72.8
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.5e-57 226.5 158 71.5
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.5e-57 226.5 157 70.7
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.5e-57 226.5 157 71.3
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.9e-57 226.1 154 72.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 2.5e-57 225.7 158 72.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 2.5e-57 225.7 157 70.1
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 5.5e-57 224.6 152 73.0
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.5e-57 224.6 158 70.3
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 7.2e-57 224.2 158 70.9
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.2e-56 223.4 156 72.4
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.6e-56 223.0 156 71.2
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.7e-56 222.2 161 69.6
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 3.6e-56 221.9 152 72.4
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.6e-56 221.9 156 70.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 6.1e-56 221.1 152 69.1
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 6.1e-56 221.1 151 72.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.0e-55 220.3 176 65.3
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.0e-55 220.3 156 71.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.4e-55 219.9 154 68.2
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.4e-55 219.9 156 67.9
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.0e-55 218.4 156 67.3
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 4.0e-55 218.4 151 74.2
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 5.2e-55 218.0 156 68.6
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.5e-54 216.5 156 70.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.5e-54 216.5 154 68.2
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.5e-54 216.5 157 70.7
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 3.3e-54 215.3 155 67.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.4e-54 214.9 158 67.7
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 5.7e-54 214.5 158 67.1
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 7.5e-54 214.2 158 66.5
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.5e-54 214.2 158 67.7
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 7.5e-54 214.2 156 71.2
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 9.7e-54 213.8 158 67.7
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.3e-53 213.4 158 69.0
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.7e-53 213.0 156 69.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.7e-53 213.0 156 70.5
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 2.2e-53 212.6 155 69.7
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.2e-53 212.6 158 67.7
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.2e-53 212.6 157 68.8
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.2e-53 212.6 158 68.4
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.8e-53 212.2 158 68.4
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 3.7e-53 211.8 156 67.3
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.7e-53 211.8 157 68.8
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 4.8e-53 211.5 158 67.1
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 4.8e-53 211.5 158 67.1
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 4.8e-53 211.5 158 66.5
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.3e-53 211.1 156 68.6
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-52 210.3 155 69.0
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.1e-52 210.3 155 69.0
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-52 210.3 155 69.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.4e-52 209.9 158 66.5
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.4e-52 209.9 158 67.1
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.4e-52 209.9 158 68.4
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.8e-52 209.5 158 66.5
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.8e-52 209.5 158 68.4
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.8e-52 209.5 155 67.1
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.4e-52 209.1 157 66.2
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.1e-52 208.8 155 68.4
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 3.1e-52 208.8 153 71.2
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 5.3e-52 208.0 159 64.8
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 7.0e-52 207.6 156 66.0
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.2e-51 206.8 156 66.7
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.2e-51 206.8 155 69.0
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.6e-51 206.5 178 62.9
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.0e-51 206.1 151 66.2
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 2.7e-51 205.7 156 66.7
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 5.9e-51 204.5 154 63.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.3e-50 203.4 156 67.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.2e-50 202.6 155 67.1
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 5.0e-50 201.4 158 65.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.1e-49 200.3 153 66.0
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 4.2e-49 198.4 159 62.9
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 4.7e-48 194.9 150 63.3
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.0e-47 193.7 128 73.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.8e-47 193.0 146 69.2
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.3e-47 192.6 156 64.1
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 3.0e-47 192.2 198 54.5
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 5.2e-47 191.4 178 58.4
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 6.8e-47 191.0 174 58.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.2e-46 190.3 155 65.8
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.0e-46 189.5 152 65.8
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.4e-46 188.7 150 62.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 5.7e-46 188.0 156 59.6
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.7e-45 186.4 153 65.4
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 3.7e-45 185.3 141 68.8
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 6.3e-45 184.5 156 59.6
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.4e-44 182.6 155 59.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 5.4e-44 181.4 157 61.1
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.7e-43 179.1 174 55.7
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.5e-43 178.7 152 61.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 4.5e-43 178.3 131 69.5
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.2e-42 176.0 115 77.4
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.7e-40 168.3 266 40.2
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.4e-38 162.2 119 68.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 5.7e-38 161.4 119 68.1
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 9.8e-38 160.6 119 68.1
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.3e-37 160.2 119 67.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.8e-37 159.1 119 67.2
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-36 157.1 114 69.3
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.4e-36 154.8 128 62.5
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 5.4e-36 154.8 115 68.7
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 5.4e-36 154.8 115 68.7
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 7.0e-36 154.5 132 59.1
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.0e-35 152.9 119 62.2
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.0e-35 152.9 115 67.0
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 2.0e-35 152.9 152 52.6
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.5e-35 152.1 115 66.1
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 4.5e-35 151.8 119 63.9
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.0e-34 150.6 114 67.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.1e-33 147.1 150 50.7
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 8.0e-32 141.0 118 60.2
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.8e-31 139.8 104 66.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.8e-31 139.8 144 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 6.4e-29 131.3 156 48.7
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 7.0e-28 127.9 113 58.4
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.3e-26 123.6 130 53.8
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 2.1e-24 116.3 115 58.3
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-24 115.2 151 44.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.1e-20 104.0 64 75.0
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 2.4e-20 102.8 112 47.3
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.5e-17 93.6 176 37.5
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.9e-17 93.2 72 62.5
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 9.5e-09 64.3 48 66.7
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 2.6e-06 56.2 40 60.0


User provided reference genes

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