Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 9.9e-72 273.5 151 100.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 8.7e-36 154.1 117 76.9
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.2e-31 139.4 106 70.8
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 3.0e-28 129.0 106 67.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 3.0e-28 129.0 106 66.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 3.9e-28 128.6 106 65.1
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 5.1e-28 128.3 106 67.9
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 8.8e-28 127.5 106 65.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.5e-27 126.7 106 67.0
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.0e-27 126.3 103 65.0
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.6e-27 125.9 106 64.2
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 2.6e-27 125.9 105 63.8
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 5.7e-27 124.8 108 63.0
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 5.7e-27 124.8 105 65.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 7.4e-27 124.4 103 65.0
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 9.7e-27 124.0 105 62.9
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.3e-26 123.6 106 66.0
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.8e-26 122.5 105 63.8
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 4.8e-26 121.7 106 62.3
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 4.8e-26 121.7 105 61.9
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.1e-25 120.6 105 61.9
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.5e-24 116.7 108 59.3
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 2.6e-24 115.9 103 63.1
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 5.9e-24 114.8 106 58.5
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 5.9e-24 114.8 103 61.2
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 7.7e-24 114.4 105 62.9
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 7.7e-24 114.4 107 59.8
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 7.7e-24 114.4 105 60.0
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.7e-23 113.2 105 58.1
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.2e-23 112.8 107 56.1
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 2.9e-23 112.5 105 59.0
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.5e-23 111.3 107 56.1
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 6.5e-23 111.3 106 60.4
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 8.5e-23 110.9 105 57.1
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.9e-22 109.8 121 54.5
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 5.5e-22 108.2 105 59.0
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-22 108.2 105 59.0
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-22 108.2 105 58.1
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.5e-22 108.2 102 58.8
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 7.2e-22 107.8 105 58.1
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.2e-22 107.8 115 55.7
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 7.2e-22 107.8 105 58.1
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.2e-21 107.1 105 56.2
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.7e-21 105.9 106 55.7
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.7e-21 105.9 105 56.2
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-21 105.5 105 56.2
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.6e-21 105.5 106 54.7
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 4.7e-21 105.1 106 54.7
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.7e-21 105.1 105 54.3
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-21 105.1 102 57.8
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 4.7e-21 105.1 105 55.2
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 6.1e-21 104.8 105 55.2
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 7.9e-21 104.4 105 55.2
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.9e-21 104.4 106 56.6
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.9e-21 104.4 106 57.5
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.9e-21 104.4 106 57.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.0e-20 104.0 102 56.9
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.0e-20 104.0 105 56.2
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.0e-20 104.0 105 55.2
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.4e-20 103.6 106 52.8
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.8e-20 103.2 105 56.2
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.8e-20 103.2 105 56.2
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-20 103.2 115 53.9
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.8e-20 103.2 103 57.3
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 2.3e-20 102.8 105 57.1
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 3.0e-20 102.4 105 54.3
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 3.9e-20 102.1 104 54.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 5.2e-20 101.7 105 56.2
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.2e-20 101.7 102 54.9
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 6.7e-20 101.3 106 53.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 6.7e-20 101.3 106 53.8
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 6.7e-20 101.3 105 56.2
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 6.7e-20 101.3 99 56.6
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 6.7e-20 101.3 106 53.8
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.1e-19 100.5 106 50.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.0e-19 99.8 105 51.4
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.0e-19 99.8 106 54.7
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.6e-19 99.4 102 55.9
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 3.3e-19 99.0 105 55.2
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 3.3e-19 99.0 103 54.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.3e-19 99.0 105 52.4
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 3.3e-19 99.0 105 52.4
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 4.4e-19 98.6 105 52.4
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 9.7e-19 97.4 106 49.1
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 4.8e-18 95.1 105 52.4
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 4.8e-18 95.1 103 51.5
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 6.3e-18 94.7 105 50.5
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 6.3e-18 94.7 105 49.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 6.3e-18 94.7 105 50.5
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 6.3e-18 94.7 105 50.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 8.2e-18 94.4 107 49.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 8.2e-18 94.4 118 50.0
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-17 94.0 105 49.5
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.1e-17 94.0 103 52.4
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.4e-17 93.6 105 52.4
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-17 93.6 105 52.4
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-17 93.6 105 52.4
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.8e-17 93.2 105 52.4
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.8e-17 93.2 105 50.5
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 2.4e-17 92.8 105 48.6
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 4.1e-17 92.0 106 49.1
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 5.3e-17 91.7 105 50.5
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 5.3e-17 91.7 105 49.5
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 9.1e-17 90.9 105 51.4
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 9.1e-17 90.9 106 50.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.6e-16 89.4 105 49.5
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 2.6e-16 89.4 105 49.5
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.5e-16 88.6 106 48.1
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.7e-15 86.7 105 47.6
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.7e-15 86.7 105 42.9
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 6.5e-15 84.7 122 45.9
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.5e-14 82.8 87 54.0
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 7.2e-14 81.3 106 45.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 3.0e-12 75.9 69 62.3
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.5e-11 73.6 148 39.2
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 4.8e-10 68.6 105 41.0
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.1e-09 67.4 65 55.4
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.1e-09 65.9 94 48.9
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 5.3e-09 65.1 65 55.4
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.0e-09 64.7 106 38.7
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 9.1e-09 64.3 98 45.9
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 9.1e-09 64.3 51 70.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.2e-08 63.9 65 55.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 5.9e-08 61.6 106 41.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 7.7e-08 61.2 106 40.6
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 2.9e-07 59.3 65 52.3
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 6.5e-07 58.2 105 37.1
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 5.5e-06 55.1 64 50.0
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 9.4e-06 54.3 65 47.7


User provided reference genes

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