Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012305 Daucus carota HOM05D001456 ORTHO05D010257 2.5e-146 522.3 307 100.0
DCAR_012304 Daucus carota HOM05D000095 ORTHO05D010257 5.5e-45 185.7 110 82.7
Gohir.D11G108200 Gossypium hirsutum HOM05D001456 ORTHO05D002799 8.0e-36 155.2 172 45.3
Gorai.007G116200 Gossypium raimondii HOM05D001456 ORTHO05D002799 1.0e-35 154.8 172 45.3
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.4e-35 154.5 172 46.5
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 1.4e-35 154.5 172 45.9
Gohir.A11G103800 Gossypium hirsutum HOM05D001456 ORTHO05D002799 2.3e-35 153.7 172 45.3
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 4.0e-35 152.9 172 45.9
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 5.2e-35 152.5 172 45.9
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 6.8e-35 152.1 172 44.2
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 6.8e-35 152.1 169 45.6
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 2.0e-34 150.6 172 44.2
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 3.4e-34 149.8 173 45.1
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 4.4e-34 149.4 167 46.1
FvH4_1g26400 Fragaria vesca HOM05D001456 ORTHO05D002799 7.5e-34 148.7 172 43.6
FAN19G2030 Fragaria x ananassa HOM05D001456 ORTHO05D002799 9.8e-34 148.3 172 43.6
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 2.8e-33 146.7 167 43.7
FAN26G2486 Fragaria x ananassa HOM05D001456 ORTHO05D002799 3.7e-33 146.4 172 44.2
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 6.3e-33 145.6 197 41.6
MD17G1283700 Malus domestica HOM05D001456 ORTHO05D002799 8.3e-33 145.2 169 43.8
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 8.3e-33 145.2 169 45.0
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 1.1e-32 144.8 167 44.9
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.1e-32 144.8 169 45.0
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 1.4e-32 144.4 172 41.9
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 1.4e-32 144.4 173 44.5
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 5.4e-32 142.5 173 43.9
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 5.4e-32 142.5 195 41.5
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 5.4e-32 142.5 164 45.1
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 9.1e-32 141.7 169 41.4
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.6e-31 141.0 169 41.4
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.6e-31 141.0 169 45.0
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.0e-31 140.6 164 43.9
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 3.5e-31 139.8 168 42.9
QL12p034495 Quercus lobata HOM05D001456 ORTHO05D002799 3.5e-31 139.8 168 42.9
PGSC0003DMG400001458 Solanum tuberosum HOM05D001456 ORTHO05D002799 3.5e-31 139.8 169 41.4
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 3.5e-31 139.8 170 41.8
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 1.0e-30 138.3 169 42.0
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 1.0e-30 138.3 167 43.7
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 1.0e-30 138.3 172 40.1
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 1.3e-30 137.9 167 44.3
arahy.Tifrunner.gnm1.ann1.TIM68F Arachis hypogaea HOM05D001456 ORTHO05D002799 1.7e-30 137.5 156 41.7
Manes.09G180700 Manihot esculenta HOM05D001456 ORTHO05D002799 1.7e-30 137.5 165 41.8
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 2.2e-30 137.1 169 42.6
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 2.9e-30 136.7 170 40.6
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 5.0e-30 136.0 167 42.5
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 5.0e-30 136.0 170 39.4
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 6.5e-30 135.6 156 44.2
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 6.5e-30 135.6 173 41.0
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 6.5e-30 135.6 167 40.7
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 8.5e-30 135.2 172 39.5
EL10As5g23613 Beta vulgaris HOM05D001456 ORTHO05D002799 8.5e-30 135.2 169 40.8
Peaxi162Scf00166g00428 Petunia axillaris HOM05D001456 ORTHO05D002799 8.5e-30 135.2 148 45.3
Ah.11g045840 Amaranthus hybridus HOM05D001456 ORTHO05D002799 1.5e-29 134.4 169 43.2
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 1.5e-29 134.4 170 40.0
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 1.5e-29 134.4 170 40.0
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.5e-29 134.4 156 44.2
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 1.5e-29 134.4 153 44.4
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 1.5e-29 134.4 153 43.8
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 1.5e-29 134.4 153 43.8
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 2.5e-29 133.7 170 41.2
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 2.5e-29 133.7 168 41.1
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 2.5e-29 133.7 181 42.0
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 3.2e-29 133.3 172 39.0
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 3.2e-29 133.3 176 39.8
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 3.2e-29 133.3 156 41.7
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 3.2e-29 133.3 164 42.1
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 5.5e-29 132.5 164 40.2
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.5e-29 132.5 168 39.9
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 7.2e-29 132.1 167 41.9
CAN.G497.102 Capsicum annuum HOM05D001456 ORTHO05D002799 9.5e-29 131.7 164 42.1
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 9.5e-29 131.7 167 40.1
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 9.5e-29 131.7 168 40.5
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.2e-28 131.3 169 40.2
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.2e-28 131.3 172 39.0
Hma1.2p1_3304F.1_g335090 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 1.2e-28 131.3 167 38.9
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 2.1e-28 130.6 170 38.2
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.1e-28 130.6 163 41.7
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 2.1e-28 130.6 170 40.0
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 2.8e-28 130.2 201 35.3
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 2.8e-28 130.2 165 41.2
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 2.8e-28 130.2 163 41.1
MSTRG.20358 Avicennia marina HOM05D001456 ORTHO05D002799 3.6e-28 129.8 166 38.6
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 3.6e-28 129.8 167 42.5
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 3.6e-28 129.8 170 39.4
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 3.6e-28 129.8 170 39.4
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 3.6e-28 129.8 164 41.5
Aqoxy5G02792 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 4.7e-28 129.4 159 41.5
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 4.7e-28 129.4 170 39.4
TAR636G1258 Trochodendron aralioides HOM05D001456 ORTHO05D002799 4.7e-28 129.4 167 41.9
Rhsim05G0122100 Rhododendron simsii HOM05D001456 ORTHO05D002799 6.1e-28 129.0 154 42.2
DCAR_005725 Daucus carota HOM05D001456 ORTHO05D002799 8.0e-28 128.6 170 37.1
Lsat_1_v5_gn_9_77400 Lactuca sativa HOM05D001456 ORTHO05D002799 8.0e-28 128.6 170 36.5
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 8.0e-28 128.6 163 40.5
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 1.0e-27 128.3 167 40.1
Actinidia01663 Actinidia chinensis HOM05D001456 ORTHO05D002799 1.4e-27 127.9 171 39.8
CAN.G1248.22 Capsicum annuum HOM05D001456 ORTHO05D002799 1.4e-27 127.9 167 38.9
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.4e-27 127.9 157 42.0
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 1.4e-27 127.9 167 40.1
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 1.4e-27 127.9 173 38.7
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 2.3e-27 127.1 155 41.9
ECA236G0747 Erigeron canadensis HOM05D001456 ORTHO05D002799 2.3e-27 127.1 170 35.9
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 2.3e-27 127.1 160 43.1
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 2.3e-27 127.1 167 41.9
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 3.0e-27 126.7 167 38.9
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 4.0e-27 126.3 167 40.1
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 4.0e-27 126.3 153 41.8
vmacro19766 Vaccinium macrocarpon HOM05D001456 ORTHO05D002799 4.0e-27 126.3 154 41.6
DCAR_025306 Daucus carota HOM05D001456 ORTHO05D002799 5.2e-27 125.9 167 38.3
Lj1g0004173 Lotus japonicus HOM05D001456 ORTHO05D002799 5.2e-27 125.9 153 42.5
Nitab4.5_0005904g0040 Nicotiana tabacum HOM05D001456 ORTHO05D002799 8.8e-27 125.2 167 37.7
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 8.8e-27 125.2 169 37.9
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 8.8e-27 125.2 176 36.9
Sabra05G0015100 Salix brachista HOM05D001456 ORTHO05D002799 8.8e-27 125.2 153 41.2
Sopen01g044590 Solanum pennellii HOM05D001456 ORTHO05D002799 8.8e-27 125.2 167 40.1
PGSC0003DMG400018288 Solanum tuberosum HOM05D001456 ORTHO05D002799 8.8e-27 125.2 167 40.1
Nn4g25391 Nelumbo nucifera HOM05D001456 ORTHO05D002799 1.2e-26 124.8 167 40.1
TPR.G1642 Trifolium pratense HOM05D001456 ORTHO05D002799 1.5e-26 124.4 170 38.8
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 2.0e-26 124.0 134 45.5
SGA_v2.0_scaffold5G02913 Striga asiatica HOM05D001456 ORTHO05D002799 2.0e-26 124.0 153 41.2
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 2.6e-26 123.6 156 37.8
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 2.6e-26 123.6 156 37.8
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 2.6e-26 123.6 156 37.8
Migut.D00022 Erythranthe guttata HOM05D001456 ORTHO05D002799 2.6e-26 123.6 147 43.5
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 2.6e-26 123.6 167 38.3
Phvul.001G217000 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 2.6e-26 123.6 172 39.5
Solyc01g101140.4 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.6e-26 123.6 193 36.8
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 4.4e-26 122.9 156 37.2
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 4.4e-26 122.9 156 37.2
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 9.8e-26 121.7 167 38.9
HanXRQChr09g0270991 Helianthus annuus HOM05D001456 ORTHO05D002799 1.3e-25 121.3 170 35.9
Atru.chr5.890 Acer truncatum HOM05D001456 ORTHO05D002799 3.7e-25 119.8 144 43.1
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 4.9e-25 119.4 167 37.7
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 4.9e-25 119.4 167 36.5
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 1.1e-24 118.2 153 37.9
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 1.8e-24 117.5 176 38.6
PSO170G0651 Papaver somniferum HOM05D001456 ORTHO05D002799 2.4e-24 117.1 162 38.9
Psat3g018040 Pisum sativum HOM05D001456 ORTHO05D002799 2.4e-24 117.1 147 40.1
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 3.1e-24 116.7 167 38.9
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 4.1e-24 116.3 154 39.0
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 5.4e-24 115.9 173 37.0
PSO357G0431 Papaver somniferum HOM05D001456 ORTHO05D002799 5.4e-24 115.9 158 39.2
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 5.4e-24 115.9 169 37.3
Ca_09240_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 1.6e-23 114.4 146 41.1
TPR.G8451 Trifolium pratense HOM05D001456 ORTHO05D002799 1.6e-23 114.4 147 40.8
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 2.0e-23 114.0 157 37.6
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 2.7e-23 113.6 163 37.4
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 2.7e-23 113.6 169 38.5
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 7.8e-23 112.1 155 40.6
Glyma.03G223251 Glycine max HOM05D001456 ORTHO05D002799 1.0e-22 111.7 171 36.3
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 2.9e-22 110.2 160 38.1
Lj9A230G21 Lonicera japonica HOM05D001456 ORTHO05D002799 2.9e-22 110.2 144 40.3
Cpa.g.sc519.4 Carica papaya HOM05D001456 ORTHO05D002799 5.0e-22 109.4 118 45.8
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 6.6e-22 109.0 121 44.6
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 8.6e-22 108.6 173 35.3
Medtr7g110390 Medicago truncatula HOM05D001456 ORTHO05D002799 1.1e-21 108.2 150 38.7
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 4.3e-21 106.3 121 42.1
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 2.8e-20 103.6 169 33.7
HanXRQChr03g0088761 Helianthus annuus HOM05D001456 ORTHO05D002799 8.0e-20 102.1 202 31.2
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 5.7e-18 95.9 163 36.8
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 2.2e-17 94.0 160 31.9
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 2.2e-17 94.0 123 39.0
HanXRQChr03g0088751 Helianthus annuus HOM05D001456 ORTHO05D002799 2.9e-17 93.6 143 36.4
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 4.9e-17 92.8 174 28.7
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 8.3e-17 92.0 119 37.8
Zm00001eb109990 Zea mays HOM05D001456 ORTHO05D002799 3.2e-16 90.1 153 33.3
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 1.6e-15 87.8 114 37.7
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 2.0e-15 87.4 156 32.7
Zm00001eb018010 Zea mays HOM05D001456 ORTHO05D050024 7.8e-15 85.5 216 29.2
Lalb_Chr02g0147591 Lupinus albus HOM05D001456 ORTHO05D002799 3.0e-14 83.6 101 42.6
Ca_09277_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 3.6e-12 76.6 170 31.2
vmacro19767 Vaccinium macrocarpon HOM05D001456 ORTHO05D002799 3.6e-12 76.6 119 33.6
Lj1g0013696 Lotus japonicus HOM05D001456 ORTHO05D002799 5.2e-11 72.8 106 36.8
Medtr7g108660 Medicago truncatula HOM05D001456 ORTHO05D002799 2.6e-10 70.5 148 30.4
Lj5C319T15 Lonicera japonica HOM05D001456 ORTHO05D002799 5.8e-10 69.3 121 30.6
Os03g0370200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D050024 1.7e-09 67.8 122 32.8
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 4.9e-09 66.2 132 32.6


User provided reference genes

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