Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 8.4e-106 387.1 207 100.0
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 7.2e-65 251.1 235 63.0
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 6.1e-64 248.1 222 64.0
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 6.7e-63 244.6 230 61.7
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 5.7e-62 241.5 208 66.8
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 1.7e-61 240.0 213 65.7
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 1.7e-61 240.0 213 65.3
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.7e-61 238.8 217 65.0
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 1.1e-60 237.3 213 65.3
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.1e-60 237.3 210 64.3
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 1.4e-60 236.9 218 63.3
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 3.1e-60 235.7 206 64.6
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 4.1e-60 235.3 214 64.5
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 4.1e-60 235.3 214 65.4
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 5.3e-60 235.0 210 64.8
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 7.0e-60 234.6 205 66.3
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 9.1e-60 234.2 217 63.6
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 9.1e-60 234.2 213 65.7
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 1.2e-59 233.8 211 63.5
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 1.2e-59 233.8 206 65.0
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 1.6e-59 233.4 210 65.2
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 5.9e-59 231.5 200 69.0
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 7.7e-59 231.1 212 64.2
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.0e-58 230.7 204 64.2
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.7e-58 229.9 229 60.7
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.7e-58 229.9 200 69.0
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 1.7e-58 229.9 208 63.9
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 2.9e-58 229.2 175 71.4
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 2.9e-58 229.2 214 63.6
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 3.8e-58 228.8 210 62.9
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 3.8e-58 228.8 207 63.8
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 5.0e-58 228.4 208 64.9
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 5.0e-58 228.4 213 63.4
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 6.5e-58 228.0 229 59.8
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 6.5e-58 228.0 204 63.2
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 6.5e-58 228.0 215 63.7
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 6.5e-58 228.0 203 64.5
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 8.5e-58 227.6 200 68.5
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 1.5e-57 226.9 207 63.3
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 7.2e-57 224.6 229 59.4
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 9.4e-57 224.2 216 62.5
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 9.4e-57 224.2 212 61.8
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 2.7e-56 222.6 207 62.8
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 3.6e-56 222.2 214 62.1
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 4.7e-56 221.9 211 61.6
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 4.7e-56 221.9 207 61.8
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 6.1e-56 221.5 205 63.4
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 8.0e-56 221.1 209 60.3
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.0e-55 220.7 214 62.1
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 3.0e-55 219.2 210 61.0
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 4.0e-55 218.8 226 60.6
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 5.2e-55 218.4 209 61.2
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 5.2e-55 218.4 216 61.6
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.8e-55 218.0 215 60.5
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 8.8e-55 217.6 226 60.6
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 8.8e-55 217.6 207 62.3
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 1.2e-54 217.2 206 60.7
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 2.0e-54 216.5 212 59.4
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.4e-54 215.3 215 60.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.8e-54 214.2 205 61.0
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 1.3e-53 213.8 204 59.8
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 1.3e-53 213.8 228 60.1
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 3.7e-53 212.2 205 58.0
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 3.7e-53 212.2 215 60.0
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 6.3e-53 211.5 205 58.0
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 1.1e-52 210.7 200 61.0
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.2e-51 207.2 208 58.2
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 2.7e-51 206.1 221 59.7
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 1.0e-50 204.1 202 58.9
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 1.7e-50 203.4 202 59.4
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 5.0e-50 201.8 216 56.9
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.6e-50 201.1 236 54.2
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 1.1e-49 200.7 212 57.1
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 1.9e-49 199.9 212 57.5
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 5.5e-49 198.4 220 58.2
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 7.2e-49 198.0 214 57.5
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 4.7e-48 195.3 203 58.1
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 1.0e-47 194.1 208 55.3
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 3.0e-47 192.6 210 54.3
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 8.9e-47 191.0 165 64.8
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 1.2e-46 190.7 210 56.2
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 3.4e-46 189.1 205 57.6
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.8e-45 186.0 112 83.0
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 3.7e-45 185.7 202 56.9
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 3.7e-45 185.7 210 54.3
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 8.3e-45 184.5 137 73.0
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 1.4e-44 183.7 206 54.4
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.8e-44 183.3 209 55.5
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.6e-43 180.3 209 54.5
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.6e-43 180.3 209 54.5
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 7.8e-43 177.9 210 55.2
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 7.8e-43 177.9 203 54.2
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 7.8e-43 177.9 203 54.2
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 7.8e-43 177.9 210 55.2
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.7e-42 176.8 117 77.8
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 1.6e-40 170.2 184 56.0
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.7e-40 168.7 214 50.5
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 1.8e-39 166.8 193 53.4
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 2.3e-39 166.4 119 73.1
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 2.2e-37 159.8 122 68.9
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 3.6e-32 142.5 82 82.9
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-31 141.0 213 47.9
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 4.0e-31 139.0 92 75.0
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 3.4e-30 136.0 81 80.2
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 7.5e-30 134.8 215 45.6
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.4e-28 128.6 147 52.4
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 9.2e-28 127.9 147 53.1
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.9e-26 122.5 203 43.8
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 2.8e-24 116.3 210 41.9
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 8.1e-24 114.8 211 39.3
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.2e-20 102.8 150 45.3
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 6.6e-18 95.1 46 100.0
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 1.9e-17 93.6 126 42.9
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.6e-17 92.0 157 47.1
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.2e-14 84.3 205 36.6
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 4.9e-13 79.0 128 44.5
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.4e-12 77.4 46 84.8
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 5.4e-12 75.5 44 81.8
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 3.5e-11 72.8 154 40.9
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 3.5e-11 72.8 45 75.6
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 1.0e-10 71.2 131 41.2
Rhsim01G0083000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.5e-09 67.4 96 51.0
Rhsim01G0082000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-07 61.2 192 30.7
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 3.1e-07 59.7 96 39.6
MCO02G477 Micromonas commoda HOM05D006141 ORTHO05D007670 4.0e-07 59.3 153 32.0


User provided reference genes

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