Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 6.7e-19 96.3 47 100.0
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 8.8e-19 95.9 46 100.0
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 2.0e-15 84.7 46 82.6
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.9e-14 80.9 46 78.3
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 3.8e-14 80.5 46 78.3
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 3.8e-14 80.5 46 73.9
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 3.8e-14 80.5 46 73.9
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 5.0e-14 80.1 46 78.3
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 1.9e-13 78.2 46 73.9
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 4.2e-13 77.0 46 76.1
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 5.5e-13 76.6 46 71.7
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 7.2e-13 76.3 46 73.9
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.2e-12 75.5 44 72.7
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 2.7e-12 74.3 46 71.7
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 3.6e-12 73.9 46 71.7
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 4.7e-12 73.6 46 71.7
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 4.7e-12 73.6 46 71.7
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 4.7e-12 73.6 46 71.7
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 4.7e-12 73.6 47 74.5
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 8.0e-12 72.8 39 82.1
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 1.0e-11 72.4 46 73.9
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 1.0e-11 72.4 44 70.5
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 1.0e-11 72.4 46 67.4
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 1.0e-11 72.4 46 76.1
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.4e-11 72.0 46 71.7
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 1.8e-11 71.6 46 71.7
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 2.3e-11 71.2 46 69.6
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.3e-11 71.2 38 84.2
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 4.0e-11 70.5 46 69.6
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 4.0e-11 70.5 44 72.7
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 6.8e-11 69.7 38 78.9
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 6.8e-11 69.7 44 70.5
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 6.8e-11 69.7 44 70.5
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 8.8e-11 69.3 46 67.4
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 8.8e-11 69.3 38 78.9
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 8.8e-11 69.3 38 78.9
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 8.8e-11 69.3 44 68.2
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 8.8e-11 69.3 39 74.4
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 1.2e-10 68.9 44 65.9
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.2e-10 68.9 46 67.4
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 1.2e-10 68.9 46 67.4
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 1.2e-10 68.9 44 65.9
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 1.5e-10 68.6 38 76.3
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.5e-10 68.6 46 67.4
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 1.5e-10 68.6 37 81.1
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 1.5e-10 68.6 37 81.1
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 1.5e-10 68.6 37 81.1
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 2.6e-10 67.8 38 78.9
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 2.6e-10 67.8 40 75.0
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 3.4e-10 67.4 38 73.7
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 4.4e-10 67.0 38 76.3
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 4.4e-10 67.0 37 78.4
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 4.4e-10 67.0 37 78.4
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 4.4e-10 67.0 40 75.0
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 4.4e-10 67.0 38 76.3
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 4.4e-10 67.0 46 69.6
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.4e-10 67.0 47 66.0
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 4.4e-10 67.0 37 78.4
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 4.4e-10 67.0 44 68.2
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 5.7e-10 66.6 37 78.4
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 5.7e-10 66.6 46 69.6
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 5.7e-10 66.6 39 76.9
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 7.5e-10 66.2 36 80.6
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 7.5e-10 66.2 46 65.2
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 9.8e-10 65.9 37 78.4
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 9.8e-10 65.9 44 65.9
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 9.8e-10 65.9 49 63.3
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.3e-09 65.5 37 75.7
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 1.3e-09 65.5 37 75.7
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 2.2e-09 64.7 46 63.0
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 2.8e-09 64.3 39 66.7
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 2.8e-09 64.3 36 77.8
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 2.8e-09 64.3 37 75.7
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 3.7e-09 63.9 38 73.7
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 4.8e-09 63.5 50 62.0
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 6.3e-09 63.2 36 75.0
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.3e-09 63.2 36 75.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.3e-09 63.2 36 75.0
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.3e-09 63.2 36 75.0
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 6.3e-09 63.2 36 75.0
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 6.3e-09 63.2 49 61.2
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 6.3e-09 63.2 46 60.9
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 8.3e-09 62.8 37 73.0
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.4e-08 62.0 46 63.0
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.8e-08 61.6 42 64.3
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.8e-08 61.6 42 64.3
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.8e-08 61.6 42 64.3
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.8e-08 61.6 42 64.3
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.8e-08 61.6 42 64.3
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 3.1e-08 60.8 38 68.4
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 3.1e-08 60.8 38 68.4
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 3.1e-08 60.8 38 68.4
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 3.1e-08 60.8 38 68.4
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 3.1e-08 60.8 38 68.4
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 4.1e-08 60.5 46 60.9
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 4.1e-08 60.5 38 65.8
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 5.4e-08 60.1 38 65.8
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 5.4e-08 60.1 43 60.5
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 5.4e-08 60.1 43 60.5
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 7.0e-08 59.7 38 65.8
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 7.0e-08 59.7 38 65.8
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 1.6e-07 58.5 38 63.2
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.0e-07 58.2 34 70.6
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 3.5e-07 57.4 37 59.5
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 1.7e-06 55.1 34 67.6


User provided reference genes

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