Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 2386.3 1181 100.0
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1923.3 1185 81.1
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1915.2 1250 76.3
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1881.3 1238 75.3
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1866.7 1250 74.8
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1859.3 1250 74.2
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1859.3 1248 74.2
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1851.3 1249 73.4
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1846.2 1251 73.6
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1844.3 1249 73.2
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1839.3 1250 73.7
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1837.4 1255 73.7
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1835.8 1250 73.5
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1830.8 1251 73.1
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1826.6 1246 73.2
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1826.2 1253 72.7
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1824.3 1249 73.0
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1821.6 1244 73.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1820.4 1249 72.7
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1818.5 1235 74.0
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1815.4 1245 73.2
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1813.5 1251 72.3
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1812.0 1251 72.3
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1811.2 1249 71.9
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1811.2 1250 72.2
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1810.0 1235 73.7
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1804.3 1250 72.0
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1803.9 1249 72.2
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1803.5 1250 72.0
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1803.5 1252 71.6
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1803.1 1250 71.9
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1802.7 1251 71.9
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1800.4 1250 71.0
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1799.3 1249 72.1
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1798.9 1250 72.5
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1798.5 1249 71.7
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1798.1 1249 72.0
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1796.6 1250 72.1
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1796.2 1249 71.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1795.8 1246 72.2
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1793.9 1246 71.7
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1790.8 1249 71.7
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1790.4 1276 70.4
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1790.0 1246 72.6
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1789.6 1249 71.5
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1789.6 1250 71.8
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1786.2 1247 71.9
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1785.4 1251 71.5
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1780.8 1251 71.1
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1778.5 1257 71.8
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1778.5 1249 71.0
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1777.3 1311 69.0
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1770.7 1253 70.7
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1769.2 1235 71.2
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1767.3 1360 66.8
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1766.1 1252 70.7
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1764.2 1253 70.8
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1758.4 1256 70.5
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1758.0 1256 70.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1755.0 1245 70.8
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1754.2 1224 71.9
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1748.0 1208 72.8
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1748.0 1250 70.2
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1737.6 1253 70.0
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1735.3 1204 72.0
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1735.3 1249 69.5
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1734.5 1220 71.3
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1733.0 1248 69.3
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1731.5 1260 69.4
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1729.9 1250 69.4
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1729.9 1209 72.0
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1728.4 1248 69.1
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1728.0 1248 69.1
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1726.5 1071 79.7
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1725.3 1250 68.9
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1724.1 1248 68.5
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1723.0 1248 69.1
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1723.0 1253 68.7
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1722.2 1248 68.8
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1721.4 1248 68.8
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1717.6 1250 68.6
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1715.7 1249 68.4
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1715.3 1250 68.3
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1710.7 1176 73.0
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1706.8 1248 68.7
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1694.5 1229 69.3
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1686.0 1204 70.2
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1684.1 1273 66.8
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1676.0 1257 67.1
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1673.7 1058 77.4
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1667.5 1071 76.2
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1667.1 1220 69.9
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1659.8 1373 63.5
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1648.3 1245 67.5
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1634.8 1247 66.4
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1632.5 1246 66.1
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1629.8 1248 65.6
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1625.9 1072 74.8
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1607.4 1118 72.0
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 1565.4 1086 72.1
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1546.6 1735 51.2
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1546.6 1136 68.8
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1542.7 1167 67.5
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1534.6 1251 64.3
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1532.3 1131 68.7
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1492.2 1270 60.2
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1458.7 1054 70.1
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1448.3 1252 59.1
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1434.1 1271 58.3
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1410.6 1268 57.6
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1373.2 964 72.1
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1326.2 923 71.9
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1305.0 1146 59.0
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1255.0 841 74.0
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 0.0e+00 1181.0 826 72.3
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1138.6 897 64.4
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1096.3 1163 53.4
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 3.4e-308 1062.0 1083 54.8
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 8.6e-296 1020.8 1111 52.7
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 2.4e-290 1002.7 925 59.0
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.9e-274 949.9 707 68.0
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 3.2e-234 816.2 712 60.1
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.0e-208 731.5 534 69.1
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.4e-205 721.1 847 46.4
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.6e-204 716.8 531 67.2
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 8.0e-169 599.0 644 53.4
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 2.0e-164 584.3 1209 32.3
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 5.2e-160 569.7 446 65.7
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.5e-148 530.4 368 72.6
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.1e-108 398.3 312 67.3
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.5e-106 391.3 266 72.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 5.1e-99 367.1 319 59.6
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.7e-94 352.1 205 82.0
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 8.5e-94 349.7 205 82.4
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 5.2e-91 340.5 417 49.9
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 5.5e-85 320.5 310 54.2
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 6.1e-84 317.0 183 80.3
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 5.9e-79 300.4 204 71.6
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 8.8e-75 286.6 339 48.1
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.8e-73 281.6 218 64.2
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 2.3e-70 271.9 173 75.1
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 1.4e-59 236.1 443 37.7
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 7.8e-55 220.3 136 72.1
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 3.7e-49 201.4 127 74.8
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 1.4e-43 183.0 132 61.4
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 3.7e-41 174.9 132 67.4
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 2.7e-39 168.7 452 31.0
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 2.3e-38 165.6 446 30.9
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 1.6e-36 159.5 439 30.8
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 8.4e-33 147.1 183 45.4
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 7.8e-31 140.6 90 73.3
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 8.7e-30 137.1 81 80.2
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 6.2e-28 131.0 152 48.0
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-27 130.2 110 61.8
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-27 130.2 110 61.8
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-27 130.2 110 61.8
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.4e-26 124.8 94 60.6
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 9.3e-24 117.1 83 63.9
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 2.1e-23 115.9 75 70.7
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.7e-23 115.5 76 69.7
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.0e-22 113.6 111 55.0
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.0e-22 113.6 73 71.2
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.0e-22 113.6 73 71.2
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 2.3e-22 112.5 83 61.4
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.9e-22 111.7 76 67.1
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 6.6e-22 110.9 76 67.1
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.6e-20 106.3 83 57.8
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 6.2e-20 104.4 66 75.8
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.2e-17 95.9 142 43.7
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 1.4e-16 93.2 47 87.2
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 2.1e-15 89.4 92 54.3
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 1.8e-14 86.3 44 90.9
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 2.2e-09 69.3 42 73.8
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 8.4e-09 67.4 62 58.1
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 1.4e-08 66.6 44 63.6
MBI11_g09451_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 7.1e-08 64.3 122 36.1
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 2.1e-07 62.8 270 24.8
AUR62024548 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.6e-07 61.6 43 55.8
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 7.9e-07 60.8 45 62.2


User provided reference genes

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