Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.4e-254 880.9 492 100.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 4.6e-110 402.5 498 52.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.6e-107 392.9 522 49.0
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 3.4e-105 386.3 523 49.5
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-96 357.8 514 48.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.9e-93 346.3 508 48.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.1e-90 338.2 514 46.1
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 7.6e-89 332.0 529 43.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-87 326.2 530 43.6
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 9.3e-87 325.1 518 43.2
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.1e-86 322.4 515 43.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.0e-85 321.6 508 44.5
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.3e-85 321.2 530 43.2
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 8.7e-85 318.5 512 46.5
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.5e-84 317.0 520 43.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.6e-83 314.3 516 44.2
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.4e-82 311.2 512 44.9
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.4e-82 310.5 501 43.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 9.0e-82 308.5 502 42.6
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.2e-81 308.1 517 43.5
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.5e-81 307.8 523 44.0
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.0e-81 307.4 500 44.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 3.4e-81 306.6 508 43.9
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.9e-81 305.8 519 42.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-80 305.1 482 44.0
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.2e-80 303.9 512 42.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.8e-80 303.1 490 43.3
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 8.5e-80 302.0 528 42.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.1e-79 301.6 516 42.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.9e-79 300.8 501 42.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.5e-79 300.4 482 44.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.2e-79 300.1 522 43.5
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 9.4e-79 298.5 470 44.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.6e-78 297.7 512 41.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.1e-78 295.8 503 41.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.4e-77 294.7 508 41.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.3e-77 293.9 497 44.1
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 8.8e-77 292.0 499 45.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.1e-76 291.6 506 42.1
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.3e-76 289.7 508 40.7
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.7e-76 289.3 425 47.5
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.3e-75 288.1 515 41.9
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.8e-75 287.0 495 42.0
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 3.7e-75 286.6 499 42.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.8e-74 284.3 507 40.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.2e-73 281.6 497 41.9
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.4e-73 280.0 533 39.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.3e-72 278.1 495 42.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.2e-72 277.3 496 39.9
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 7.2e-71 272.3 494 39.5
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.2e-70 271.6 494 41.7
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.6e-70 271.2 505 40.0
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 4.7e-70 269.6 534 40.4
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 6.1e-70 269.2 509 40.3
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.3e-69 267.3 499 40.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 5.1e-69 266.2 501 38.9
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.5e-68 264.6 498 40.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 4.4e-68 263.1 530 39.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.3e-67 259.2 513 38.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 8.2e-67 258.8 454 41.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.4e-66 257.3 510 39.4
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 4.1e-66 256.5 492 40.2
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.5e-64 248.8 533 37.9
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 8.5e-64 248.8 484 37.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 9.4e-63 245.4 492 38.0
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-62 245.0 519 39.9
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.1e-62 244.2 513 37.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.6e-62 243.4 496 38.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.0e-61 241.9 518 38.4
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.2e-61 239.6 534 36.9
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 5.2e-61 239.6 513 38.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 6.7e-61 239.2 439 42.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 3.3e-60 236.9 523 37.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 4.4e-60 236.5 414 43.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.7e-60 236.1 510 36.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.3e-59 235.0 496 38.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.2e-59 232.3 508 37.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 8.2e-59 232.3 507 37.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-58 231.5 514 37.4
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 9.1e-58 228.8 516 37.4
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.0e-57 227.6 445 39.6
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 3.5e-57 226.9 497 36.4
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.5e-57 226.5 505 38.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.3e-56 224.9 542 35.8
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 6.5e-56 222.6 510 36.9
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-55 220.7 544 35.7
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.2e-55 220.3 524 37.0
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.2e-55 219.9 515 36.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 7.2e-55 219.2 494 36.8
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.4e-55 218.8 507 35.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 6.8e-53 212.6 496 36.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.3e-51 208.4 388 39.7
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.2e-51 207.6 493 35.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 6.3e-51 206.1 501 37.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.8e-50 204.5 509 36.9
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.8e-50 204.5 422 37.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-50 204.1 425 36.9
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 2.4e-50 204.1 473 35.7
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 7.0e-50 202.6 425 36.9
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-49 201.8 408 38.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.6e-49 201.4 474 35.9
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.0e-49 201.1 440 37.5
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 4.5e-49 199.9 453 37.7
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.2e-48 197.6 477 36.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.8e-48 196.8 441 37.2
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 6.5e-48 196.1 421 36.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 8.5e-48 195.7 485 35.7
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.1e-47 195.3 498 35.9
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.5e-47 194.9 484 35.1
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 7.2e-47 192.6 486 37.2
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.7e-46 190.7 409 36.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.7e-46 189.9 453 35.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-45 188.7 427 35.6
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.2e-45 186.4 476 35.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.0e-44 184.5 478 36.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.4e-42 178.3 433 34.9
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.5e-41 173.7 522 33.0
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.0e-40 169.9 402 36.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 8.6e-40 169.1 449 33.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.1e-39 168.7 449 33.6
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.5e-39 168.3 464 34.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 3.3e-39 167.2 494 34.4
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.3e-39 167.2 453 33.6
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.6e-38 164.9 419 36.3
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.6e-38 163.7 448 33.7
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.7e-38 163.3 426 35.7
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.4e-37 161.8 362 37.6
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-36 158.7 442 36.4
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.8e-34 151.4 352 35.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 9.2e-34 149.1 447 35.8
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.2e-33 148.7 254 39.4
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 8.6e-32 142.5 126 62.7
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.1e-31 142.1 443 32.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.5e-31 141.7 144 54.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-31 141.0 454 35.7
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.6e-31 139.8 182 45.1
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.3e-31 139.4 459 30.1
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-30 138.7 404 33.2
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.6e-30 138.3 452 34.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.6e-30 138.3 135 54.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 3.6e-30 137.1 366 33.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.6e-30 137.1 390 32.6
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 6.2e-30 136.3 505 32.7
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.2e-30 136.3 348 33.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.8e-29 132.9 465 30.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.8e-28 129.8 435 28.0
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.4e-26 125.2 284 35.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.3e-23 113.6 136 47.8
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 9.5e-23 112.5 506 28.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.2e-21 106.7 440 28.9
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.8e-21 106.3 83 65.1
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 8.9e-21 105.9 211 35.5
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 3.4e-20 104.0 519 26.0
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 9.8e-20 102.4 178 39.9
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.9e-16 90.5 417 28.1
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 5.1e-16 90.1 126 43.7
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.6e-14 84.0 148 34.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 2.0e-12 78.2 167 36.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 7.6e-12 76.3 202 32.2
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 9.9e-12 75.9 103 40.8
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.1e-10 70.5 369 28.5
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.4e-10 70.1 214 29.4
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.1e-09 68.2 296 28.7
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.7e-09 67.8 215 29.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.7e-09 67.8 103 37.9
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.0e-09 66.6 88 40.9
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.3e-08 65.5 196 28.6
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 1.3e-08 65.5 311 28.9
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 2.3e-08 64.7 73 47.9
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.3e-08 64.7 59 57.6
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.6e-08 63.2 49 63.3
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.5e-07 62.0 293 27.6
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.6e-07 59.3 293 27.0


User provided reference genes

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