Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.9e-128 461.8 220 100.0
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.5e-105 386.3 220 85.0
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 9.9e-105 383.6 220 84.5
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-104 383.3 220 84.1
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 8.4e-104 380.6 222 83.8
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 3.2e-103 378.6 220 83.2
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 4.2e-103 378.3 224 82.6
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 5.4e-103 377.9 220 83.2
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.6e-102 376.3 220 82.3
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.6e-102 376.3 220 83.2
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 2.7e-102 375.6 221 82.8
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 3.5e-102 375.2 220 83.6
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.6e-102 374.8 220 81.8
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 6.0e-102 374.4 220 81.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 7.8e-102 374.0 201 87.1
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.3e-101 373.2 221 82.8
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.3e-101 373.2 221 82.8
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.7e-101 372.9 220 83.2
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 3.0e-101 372.1 220 82.7
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 5.1e-101 371.3 221 82.8
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 6.6e-101 370.9 220 81.4
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.1e-100 370.2 220 80.9
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 1.5e-100 369.8 220 80.0
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 1.9e-100 369.4 220 80.5
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.5e-100 369.0 220 80.5
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.5e-100 369.0 220 82.3
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.5e-100 369.0 220 82.3
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 3.3e-100 368.6 220 80.5
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 3.3e-100 368.6 220 81.8
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 3.3e-100 368.6 220 81.8
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.3e-100 368.6 220 80.9
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 3.3e-100 368.6 220 80.5
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.3e-100 368.2 220 81.8
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 4.3e-100 368.2 236 77.1
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 7.3e-100 367.5 220 81.4
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 7.3e-100 367.5 220 80.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 9.6e-100 367.1 220 81.4
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.3e-99 366.7 220 80.9
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.3e-99 366.7 218 81.2
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.3e-99 366.7 220 81.8
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 2.1e-99 365.9 220 79.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 2.1e-99 365.9 219 80.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 2.1e-99 365.9 219 80.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.8e-99 365.5 220 80.5
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.6e-99 365.2 224 79.9
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 4.8e-99 364.8 222 79.3
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 8.1e-99 364.0 220 79.1
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 8.1e-99 364.0 222 79.3
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.1e-98 363.6 220 80.5
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.1e-98 362.1 242 74.4
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.0e-98 361.7 220 79.5
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 4.0e-98 361.7 220 79.5
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 4.0e-98 361.7 220 80.5
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 4.0e-98 361.7 220 79.5
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 9.0e-98 360.5 220 80.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.5e-97 359.8 219 78.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 2.0e-97 359.4 201 82.6
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 2.6e-97 359.0 220 79.5
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 3.4e-97 358.6 220 79.5
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 3.4e-97 358.6 220 79.1
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 4.4e-97 358.2 226 77.9
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.7e-96 356.3 220 78.6
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.8e-96 355.1 194 86.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 3.8e-96 355.1 220 78.2
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 8.4e-96 354.0 205 82.9
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 3.2e-95 352.1 183 90.2
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 4.2e-95 351.7 220 76.8
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 5.4e-95 351.3 220 78.2
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 7.1e-95 350.9 202 81.7
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.6e-94 349.7 221 76.9
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.0e-93 347.1 221 76.0
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.0e-93 347.1 221 76.0
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.3e-93 346.7 195 85.1
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.3e-93 346.7 222 73.4
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.7e-93 346.3 220 75.0
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.7e-93 346.3 221 76.0
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.9e-93 345.1 184 87.0
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 8.7e-93 344.0 221 75.6
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.1e-92 343.6 221 76.0
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.5e-92 343.2 221 74.2
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 3.3e-92 342.0 221 74.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 4.3e-92 341.7 194 84.0
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 4.3e-92 341.7 221 74.2
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 9.6e-92 340.5 204 80.4
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.3e-91 340.1 220 70.9
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 8.1e-91 337.4 220 73.2
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.4e-90 335.9 185 85.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 3.1e-90 335.5 220 73.2
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.3e-90 334.7 179 86.6
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 5.3e-90 334.7 192 82.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.2e-89 333.6 183 85.2
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.0e-89 332.8 192 82.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 2.2e-88 329.3 193 82.4
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.9e-88 328.2 192 78.6
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 8.4e-88 327.4 203 76.8
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.4e-87 325.9 203 76.4
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.2e-87 325.5 203 76.8
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.2e-86 323.6 246 67.5
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 1.8e-85 319.7 192 75.5
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.5e-84 315.8 193 73.1
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.1e-82 310.5 192 77.1
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.2e-79 298.9 215 65.1
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 4.2e-79 298.5 193 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.5e-76 289.3 190 67.9
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.5e-72 274.2 171 76.6
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.5e-72 274.2 171 76.6
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 8.7e-69 264.2 146 85.6
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.5e-68 263.5 193 63.2
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.4e-66 256.9 146 80.1
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 2.2e-64 249.6 134 86.6
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 3.2e-63 245.7 128 87.5
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.1e-60 237.3 134 82.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-56 223.8 143 74.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.3e-53 213.0 116 81.9
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.3e-53 213.0 131 74.0
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.8e-51 205.3 129 77.5
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-42 177.2 110 78.2
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-39 167.2 89 87.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.8e-35 152.9 94 77.7
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 8.5e-32 141.4 90 80.0
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 6.3e-27 125.2 86 72.1
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 3.1e-26 122.9 214 33.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.3e-23 112.8 211 34.6
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 4.3e-15 85.9 78 57.7
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 2.8e-14 83.2 40 92.5
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.8e-12 75.5 64 59.4
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.3e-08 64.3 41 65.9


User provided reference genes

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