Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 7.2e-37 156.8 80 100.0
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 2.1e-36 155.2 80 98.8
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 2.1e-36 155.2 80 98.8
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 5.0e-14 80.9 76 59.2
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 6.5e-14 80.5 77 59.7
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.1e-13 79.7 83 60.2
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.1e-13 79.7 83 60.2
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 4.2e-13 77.8 84 54.8
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 5.5e-13 77.4 84 54.8
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 9.4e-13 76.6 79 59.5
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 9.4e-13 76.6 72 61.1
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 1.2e-12 76.3 76 56.6
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 1.6e-12 75.9 76 57.9
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.1e-12 75.5 83 57.8
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.1e-12 75.5 79 54.4
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.1e-12 75.5 79 54.4
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 2.7e-12 75.1 79 59.5
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 3.6e-12 74.7 81 55.6
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 3.6e-12 74.7 76 59.2
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 4.7e-12 74.3 76 60.5
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 4.7e-12 74.3 78 60.3
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 8.0e-12 73.6 76 55.3
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.0e-11 73.2 81 55.6
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.0e-11 73.2 79 53.2
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 1.0e-11 73.2 77 58.4
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 1.0e-11 73.2 80 55.0
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 1.4e-11 72.8 73 61.6
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 1.4e-11 72.8 78 53.8
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 1.4e-11 72.8 71 60.6
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 1.8e-11 72.4 80 56.2
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 2.3e-11 72.0 73 58.9
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 2.3e-11 72.0 79 53.2
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 4.0e-11 71.2 81 51.9
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 5.2e-11 70.9 80 55.0
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 6.7e-11 70.5 81 54.3
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 6.7e-11 70.5 80 53.8
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 1.1e-10 69.7 77 51.9
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 1.5e-10 69.3 75 60.0
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 2.0e-10 68.9 75 56.0
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 2.6e-10 68.6 74 58.1
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 2.6e-10 68.6 81 55.6
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 2.6e-10 68.6 81 53.1
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.3e-10 68.2 81 54.3
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 3.3e-10 68.2 81 54.3
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 3.3e-10 68.2 75 57.3
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 5.7e-10 67.4 79 54.4
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 9.7e-10 66.6 76 57.9
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 9.7e-10 66.6 72 56.9
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 9.7e-10 66.6 77 55.8
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 9.7e-10 66.6 69 58.0
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 1.3e-09 66.2 72 56.9
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 2.2e-09 65.5 78 50.0
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 2.2e-09 65.5 78 50.0
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 2.2e-09 65.5 76 53.9
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 3.7e-09 64.7 71 53.5
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 8.2e-09 63.5 76 53.9
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.1e-08 63.2 73 50.7
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.1e-08 63.2 75 57.3
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 1.4e-08 62.8 78 48.7
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.4e-08 62.8 73 49.3
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 1.8e-08 62.4 77 49.4
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.8e-08 62.4 76 56.6
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 3.1e-08 61.6 78 48.7
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 3.1e-08 61.6 76 56.6
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 5.3e-08 60.8 81 49.4
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 9.1e-08 60.1 44 72.7
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 9.1e-08 60.1 49 65.3
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 1.2e-07 59.7 73 46.6
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 2.7e-07 58.5 75 46.7
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.7e-07 58.5 75 48.0
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 49.3
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 3.5e-07 58.2 78 47.4
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 3.5e-07 58.2 57 59.6
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 48.0
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 48.0
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 48.0
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 48.0
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-07 58.2 75 48.0
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 3.5e-07 58.2 72 47.2
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 4.5e-07 57.8 75 48.0
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 1.3e-06 56.2 53 62.3


User provided reference genes

Program Settings