Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.0e-260 901.4 465 100.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 4.7e-181 638.3 461 69.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 6.1e-181 637.9 461 68.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.5e-174 615.9 460 66.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 6.8e-172 607.8 461 65.9
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.2e-171 607.1 461 65.9
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.3e-170 603.6 463 65.9
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.4e-169 600.1 460 65.0
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.4e-169 600.1 463 63.5
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.7e-167 593.2 460 63.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.3e-166 589.0 464 63.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 6.2e-165 584.7 462 61.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.8e-164 583.2 497 60.2
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 8.9e-164 580.9 462 61.3
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.0e-163 579.7 459 62.5
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.4e-161 573.5 461 62.3
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.4e-161 571.6 463 60.7
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 2.1e-160 569.7 462 60.2
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.5e-160 568.9 455 60.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.7e-159 566.6 462 60.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.1e-158 563.9 459 62.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.5e-158 563.5 465 61.3
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-158 563.1 462 60.6
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.3e-158 562.4 461 60.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 7.3e-158 561.2 461 58.8
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 9.6e-158 560.8 462 61.7
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.8e-157 559.3 459 60.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.4e-156 557.0 463 60.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.4e-156 556.2 466 60.7
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.4e-156 556.2 466 60.3
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 6.8e-156 554.7 449 61.5
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 8.9e-156 554.3 466 59.4
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 5.8e-155 551.6 463 59.2
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 2.9e-154 549.3 462 59.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.8e-154 548.9 463 59.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 3.8e-154 548.9 463 59.6
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 6.4e-154 548.1 454 59.0
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 8.4e-154 547.7 455 58.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.1e-153 547.4 450 60.7
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.4e-153 547.0 462 57.1
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 3.2e-153 545.8 462 59.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.2e-153 545.8 452 60.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 7.1e-153 544.7 460 58.9
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 7.1e-153 544.7 435 62.8
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.2e-152 543.9 462 58.0
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.2e-152 543.9 513 55.4
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.1e-152 543.1 464 58.6
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 2.7e-152 542.7 462 58.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 4.6e-152 542.0 459 59.0
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.0e-152 541.6 463 58.7
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.7e-151 540.0 466 57.9
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.1e-150 537.3 462 57.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 4.8e-149 531.9 462 56.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.4e-148 530.4 463 57.5
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 9.0e-148 527.7 463 54.9
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.3e-146 523.9 460 56.3
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 4.9e-146 521.9 464 57.5
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.4e-146 521.5 461 57.7
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 4.2e-145 518.8 454 56.4
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 7.9e-144 514.6 459 55.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.3e-143 513.1 464 56.9
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.0e-143 512.7 461 55.1
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.5e-142 510.4 463 55.3
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.3e-142 509.2 457 55.4
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 7.3e-142 508.1 465 55.3
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 2.8e-141 506.1 467 54.2
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.4e-140 503.1 465 53.8
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 5.3e-140 501.9 466 55.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.9e-140 501.5 457 55.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 4.5e-139 498.8 465 53.1
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 5.8e-139 498.4 465 53.1
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 9.9e-139 497.7 465 55.9
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.7e-138 496.9 465 52.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.9e-138 496.1 463 54.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.4e-138 495.0 460 55.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.4e-137 493.8 463 52.9
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.4e-137 493.0 463 54.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 9.3e-137 491.1 465 52.0
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.2e-136 490.7 467 55.2
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-136 490.0 468 52.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.7e-136 489.6 456 53.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.7e-136 489.6 464 55.0
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 3.5e-136 489.2 455 53.6
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.3e-135 487.3 431 57.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.3e-135 487.3 471 53.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.3e-135 486.5 464 55.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.9e-135 485.7 431 56.6
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-134 484.2 467 52.7
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-133 480.7 494 50.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.8e-132 476.9 463 54.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.6e-131 471.5 469 50.7
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.9e-129 466.8 427 56.2
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.6e-128 463.8 466 52.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 3.0e-127 459.5 422 54.3
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 5.1e-127 458.8 463 51.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.7e-126 455.3 466 50.9
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 8.4e-122 441.4 458 48.7
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.9e-121 440.3 453 50.1
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-119 433.7 468 47.6
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 2.2e-117 426.8 449 49.4
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.5e-115 420.6 460 47.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 3.9e-111 406.0 461 46.2
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.1e-111 405.6 430 50.7
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.5e-110 403.3 468 46.2
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.0e-94 350.5 289 58.8
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 7.5e-94 348.6 425 42.4
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 4.8e-93 345.9 525 41.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.3e-92 342.4 364 48.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 5.3e-92 342.4 364 48.9
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 2.2e-85 320.5 501 37.1
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 4.5e-83 312.8 277 57.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.1e-81 308.1 455 38.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 5.0e-74 282.7 466 39.9
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 6.4e-69 265.8 327 48.3
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 2.8e-64 250.4 468 34.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 8.3e-61 238.8 515 31.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.0e-50 205.3 192 55.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.4e-47 194.9 362 35.1
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.4e-44 184.9 379 31.4
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 4.6e-43 179.9 162 55.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.7e-42 177.9 162 54.9
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 6.4e-37 159.5 368 29.6
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-34 152.1 134 50.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-34 152.1 134 50.0
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 2.3e-34 151.0 116 64.7
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.1e-34 149.8 134 49.3
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 9.6e-33 145.6 105 61.9
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 8.1e-32 142.5 126 56.3
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 5.8e-30 136.3 409 26.7
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.2e-29 134.4 217 39.2
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.2e-27 128.6 371 26.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 5.3e-23 113.2 282 30.1
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 8.7e-18 95.9 124 38.7
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.1e-16 91.3 73 58.9
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.7e-13 81.6 170 32.4
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.2e-11 75.5 72 51.4
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.2e-11 75.5 88 45.5
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 88 45.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 1.2e-06 58.9 38 65.8
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-06 57.8 39 64.1


User provided reference genes

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