Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-159 565.8 290 100.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.2e-78 297.4 294 56.8
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.8e-77 293.5 293 54.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.7e-73 279.6 292 50.7
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.7e-73 279.6 286 52.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.2e-72 276.6 297 51.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.2e-72 276.6 297 51.9
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.0e-69 266.2 290 50.7
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 8.8e-69 264.6 243 58.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.5e-68 263.8 285 51.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 9.8e-68 261.2 292 46.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.2e-67 260.0 292 47.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 5.5e-63 245.4 292 46.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.2e-62 244.2 292 47.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.2e-62 244.2 291 49.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.1e-62 243.4 290 46.2
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 6.1e-62 241.9 293 49.1
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.0e-61 239.2 294 43.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.0e-60 236.9 293 43.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.0e-60 236.9 300 47.7
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.7e-60 235.3 281 48.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-59 233.8 303 43.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.4e-58 230.7 292 41.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.1e-58 229.2 277 46.2
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.2e-57 227.6 283 46.3
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.0e-57 226.9 293 42.0
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.8e-57 224.9 245 51.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.0e-56 224.6 293 45.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.0e-56 224.6 281 44.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.7e-56 223.8 204 54.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-54 217.2 293 42.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 8.0e-54 214.9 222 48.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.0e-53 214.5 293 40.6
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.4e-52 209.1 276 41.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.7e-51 207.2 285 41.4
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.9e-51 206.5 212 48.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 8.3e-51 204.9 221 50.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 8.3e-51 204.9 291 41.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.4e-50 204.1 286 39.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.2e-50 203.0 260 45.0
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 4.1e-50 202.6 252 45.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.6e-49 200.7 287 42.5
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.0e-48 198.0 290 43.1
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-48 198.0 268 40.3
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.6e-48 194.9 302 38.1
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.5e-47 193.4 272 41.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.0e-45 188.0 282 39.4
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-45 187.2 282 39.4
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.8e-45 187.2 287 39.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 6.8e-45 185.3 301 36.2
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.6e-44 183.3 274 42.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.4e-44 182.6 280 37.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 7.5e-44 181.8 288 37.5
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.2e-43 180.3 297 37.4
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.2e-43 180.3 254 40.2
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.7e-43 179.5 285 40.4
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 8.3e-43 178.3 297 38.0
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-42 177.9 261 38.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-42 177.9 293 36.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 3.2e-42 176.4 262 38.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 7.0e-42 175.3 279 36.9
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-41 174.5 256 40.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.0e-41 172.2 292 36.0
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.8e-41 171.8 289 36.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 6.6e-40 168.7 286 36.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.3e-39 166.4 247 40.5
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.3e-39 166.0 219 41.6
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.6e-38 162.9 294 35.0
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.6e-38 162.9 292 35.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 8.1e-38 161.8 301 35.2
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.4e-37 161.0 255 39.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-37 160.6 286 36.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.2e-37 159.1 294 33.7
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 5.2e-37 159.1 261 39.8
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 9.8e-36 154.8 282 36.2
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.2e-35 153.7 284 35.2
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.2e-35 153.7 291 35.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.1e-34 151.4 210 39.5
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-34 150.6 287 34.8
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.9e-34 150.6 275 35.6
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 4.1e-34 149.4 290 35.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.6e-33 147.5 282 35.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.7e-33 146.7 274 33.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 3.5e-33 146.4 295 34.2
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.0e-32 144.8 296 33.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.3e-32 144.4 213 37.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-32 144.4 283 34.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.3e-32 143.7 279 32.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.9e-32 142.9 284 33.1
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.9e-32 142.9 256 34.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.1e-32 142.5 295 34.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.5e-31 141.0 285 35.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.9e-31 140.6 274 32.8
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.8e-30 136.7 273 32.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.7e-30 136.0 262 33.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 4.7e-30 136.0 251 33.5
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.4e-29 134.4 286 31.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-29 134.0 279 31.5
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.8e-29 134.0 239 35.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.3e-29 133.7 282 32.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.1e-29 133.3 275 34.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.0e-29 132.9 293 32.8
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.2e-29 132.5 239 35.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 6.8e-29 132.1 282 31.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.8e-29 132.1 290 31.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 8.9e-29 131.7 277 32.1
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-28 131.3 253 35.2
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.5e-28 131.0 260 32.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.4e-28 129.4 271 31.7
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.8e-28 129.0 217 35.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 5.8e-28 129.0 256 33.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 7.6e-28 128.6 158 44.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.9e-27 126.7 278 32.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.9e-27 125.9 271 35.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.4e-27 125.6 291 31.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.4e-26 123.6 201 37.3
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 7.1e-26 122.1 192 33.9
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 7.1e-26 122.1 218 36.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.2e-26 121.7 293 30.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.3e-24 117.9 276 30.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.7e-24 117.5 249 32.5
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 3.0e-24 116.7 118 49.2
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 3.9e-24 116.3 157 40.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 1.5e-23 114.4 315 29.2
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.5e-23 113.6 121 48.8
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 9.6e-23 111.7 196 37.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 9.6e-23 111.7 274 31.0
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.1e-22 110.5 246 32.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.7e-22 109.4 280 28.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 6.2e-22 109.0 248 32.3
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-21 108.2 157 39.5
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.1e-21 108.2 270 31.9
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.4e-21 107.8 195 37.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.5e-20 104.4 174 37.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 5.8e-20 102.4 151 37.7
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.8e-20 102.4 174 35.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.4e-19 99.0 258 31.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.4e-19 99.0 261 30.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.4e-19 99.0 261 30.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.4e-19 98.6 268 28.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-18 97.1 229 32.3
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.1e-17 94.0 258 27.1
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.6e-17 92.8 157 37.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 8.7e-16 88.6 252 27.4
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.1e-15 88.2 179 30.7
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.9e-15 87.4 269 27.9
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.3e-15 86.7 224 29.9
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 4.3e-15 86.3 239 31.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 9.6e-15 85.1 167 33.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 2.4e-13 80.5 268 26.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 5.3e-13 79.3 268 27.2
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 6.9e-13 79.0 276 26.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 9.0e-13 78.6 131 35.9
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.2e-12 78.2 264 28.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.2e-12 78.2 173 30.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 5.8e-12 75.9 184 30.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.7e-11 74.3 262 28.6
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.2e-11 73.9 262 28.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-08 64.3 125 32.8
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-07 61.6 142 30.3
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 5.6e-07 59.3 223 22.4
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 9.6e-07 58.5 52 57.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-06 57.8 51 54.9
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-06 57.8 51 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 2.8e-06 57.0 262 24.4


User provided reference genes

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