Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 4.1e-123 444.9 252 100.0
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 6.5e-60 235.0 258 58.1
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 6.1e-58 228.4 338 49.1
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 2.3e-57 226.5 337 47.5
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 3.0e-57 226.1 324 48.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.6e-56 223.0 327 47.7
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 3.7e-55 219.2 262 46.6
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 3.7e-55 219.2 325 48.0
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 6.3e-55 218.4 257 46.3
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.1e-54 217.6 324 43.2
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 2.4e-54 216.5 330 44.8
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 3.1e-54 216.1 330 44.8
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 2.0e-53 213.4 344 38.7
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 4.5e-53 212.2 294 50.0
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 5.9e-53 211.8 320 46.6
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.0e-52 211.1 289 45.0
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.7e-52 210.3 298 44.6
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-52 210.3 298 44.6
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.2e-52 209.9 295 49.2
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 2.9e-52 209.5 326 43.3
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 6.5e-52 208.4 326 46.0
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 8.5e-52 208.0 330 40.0
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.9e-51 206.8 330 41.5
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 4.2e-51 205.7 325 38.8
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 4.2e-51 205.7 331 42.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 5.5e-51 205.3 260 45.8
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 5.5e-51 205.3 316 47.2
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 7.2e-51 204.9 299 48.8
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 4.7e-50 202.2 298 46.6
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 6.1e-50 201.8 257 42.4
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 6.1e-50 201.8 331 44.7
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 1.8e-49 200.3 325 45.5
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.3e-49 199.9 317 37.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 6.8e-49 198.4 325 45.2
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.5e-48 197.2 321 45.8
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 2.0e-48 196.8 324 36.7
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 3.4e-48 196.1 257 43.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.4e-48 196.1 302 46.7
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 3.4e-48 196.1 225 47.6
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 2.2e-47 193.4 305 46.9
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.2e-47 193.4 286 48.3
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 2.2e-47 193.4 320 44.7
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 2.8e-47 193.0 182 54.9
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.8e-47 193.0 273 50.2
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 1.1e-46 191.0 328 45.4
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 9.1e-46 188.0 328 45.4
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 9.1e-46 188.0 316 44.0
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.2e-45 187.6 301 47.5
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.6e-45 187.2 293 47.4
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.6e-45 187.2 294 47.6
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 2.0e-45 186.8 328 44.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 7.7e-45 184.9 292 40.8
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 2.5e-43 179.9 248 40.3
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 7.2e-43 178.3 290 39.0
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 7.2e-43 178.3 270 50.4
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 2.7e-42 176.4 232 53.0
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 4.7e-42 175.6 261 38.3
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 6.1e-42 175.3 208 48.6
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 8.0e-42 174.9 318 41.8
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-41 174.5 236 44.1
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.4e-41 174.1 236 43.6
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 2.3e-41 173.3 292 43.5
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 6.8e-41 171.8 257 39.3
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 8.8e-41 171.4 331 43.2
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.2e-40 171.0 258 36.4
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.5e-40 170.6 257 38.1
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 5.7e-40 168.7 295 44.7
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.5e-40 168.3 359 38.2
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.3e-39 167.5 299 44.5
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.7e-39 167.2 231 50.2
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.2e-39 166.8 182 50.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.8e-38 163.7 298 44.6
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 7.0e-38 161.8 236 41.1
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.6e-37 160.6 232 40.1
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 3.5e-37 159.5 234 40.6
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 3.5e-37 159.5 233 41.6
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 4.5e-37 159.1 233 41.6
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 5.9e-37 158.7 287 33.8
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.5e-35 154.1 101 74.3
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.5e-35 153.3 280 44.6
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 2.5e-35 153.3 234 39.7
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 3.6e-34 149.4 235 38.7
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.4e-33 147.5 232 37.9
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 3.0e-33 146.4 298 40.6
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 5.2e-33 145.6 249 34.9
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 1.2e-32 144.4 151 53.0
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 3.4e-32 142.9 279 36.2
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 1.3e-31 141.0 259 44.8
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 4.9e-31 139.0 172 47.1
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 3.2e-30 136.3 103 66.0
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.2e-29 134.4 194 41.2
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 3.5e-29 132.9 234 47.0
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 3.5e-29 132.9 98 68.4
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 4.5e-29 132.5 255 34.1
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.7e-28 130.6 98 66.3
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-28 130.6 253 43.1
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 2.9e-28 129.8 240 34.2
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 6.1e-26 122.1 97 86.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 6.1e-26 122.1 153 48.4
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 1.8e-25 120.6 118 69.5
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 3.1e-25 119.8 253 41.1
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 6.8e-25 118.6 129 65.9
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.5e-24 117.5 61 77.0
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 9.8e-24 114.8 79 63.3
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 1.3e-23 114.4 231 40.7
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.2e-21 107.8 57 73.7
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 1.6e-21 107.5 204 34.8
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.3e-20 104.4 66 69.7
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 2.3e-20 103.6 98 55.1
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 5.6e-19 99.0 126 61.9
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-18 97.8 64 75.0
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.1e-18 97.1 66 71.2
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 3.6e-18 96.3 55 72.7
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 4.7e-18 95.9 64 75.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.7e-18 95.9 75 58.7
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.5e-16 90.9 218 28.9
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.3e-15 87.8 64 68.8
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.9e-15 86.7 220 31.4
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 4.9e-15 85.9 49 73.5
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.4e-14 83.6 94 47.9
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 2.4e-14 83.6 64 65.6
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 2.4e-14 83.6 97 48.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-13 81.3 55 72.7
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.1e-13 80.5 63 63.5
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.3e-12 77.8 60 61.7
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 1.8e-09 67.4 41 68.3
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 5.8e-08 62.4 51 56.9
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 3.2e-06 56.6 144 26.4
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 9.2e-06 55.1 98 34.7


User provided reference genes

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