Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1788.5 877 100.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1307.0 880 72.5
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 884 70.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 878 70.5
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1275.4 876 70.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 879 69.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 876 69.4
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 878 69.4
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1253.8 870 69.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 875 69.5
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 870 68.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 884 69.0
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 876 69.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 883 69.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 878 68.6
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 871 69.3
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 869 68.5
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 891 68.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 877 68.6
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 870 67.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1242.6 871 69.1
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 871 69.0
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 883 68.1
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 879 67.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 870 67.5
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1230.3 886 66.3
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 870 67.5
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 882 67.9
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 870 67.7
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 872 67.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 870 67.2
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 880 67.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 880 68.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 872 67.2
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 879 66.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 873 67.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 873 67.9
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 871 67.7
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 880 66.9
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1206.4 879 67.1
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1205.3 889 65.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 884 66.1
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 880 66.1
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1199.1 872 66.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 873 66.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 879 66.8
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 869 66.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 880 65.3
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 890 64.7
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 840 68.9
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 873 67.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 874 65.7
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 868 66.7
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 877 65.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1182.5 880 65.1
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1182.2 883 65.3
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1180.2 874 65.3
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1179.1 878 64.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 876 65.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1177.9 878 64.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1177.9 883 65.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 880 65.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1176.8 875 65.9
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1176.4 878 64.4
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1173.7 882 64.1
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 880 65.0
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1170.2 871 64.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1169.5 878 64.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 873 66.2
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 870 64.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 874 64.9
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 871 64.4
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1167.9 876 64.5
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1167.9 876 64.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1167.9 876 64.5
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 869 64.3
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 868 64.2
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1161.4 876 64.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 895 64.1
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1158.7 866 64.4
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 881 63.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1157.9 877 64.1
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1154.8 868 64.4
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1154.0 892 63.9
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1153.7 893 62.8
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1152.9 869 63.9
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1138.6 883 62.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1125.9 870 63.0
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1115.9 864 63.0
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1115.1 870 62.4
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1084.7 870 61.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 2.3e-298 1028.9 868 58.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 4.1e-295 1018.1 760 66.8
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 7.3e-292 1007.3 659 71.5
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 2.3e-290 1002.3 703 67.7
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.9e-284 982.6 864 57.8
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.6e-283 978.4 875 53.1
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.7e-280 969.5 703 65.1
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 6.2e-275 951.0 869 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.4e-274 949.1 880 53.6
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.8e-272 941.8 875 52.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.3e-203 714.1 772 47.3
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 6.0e-161 572.4 480 59.0
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-159 567.8 402 68.2
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.6e-142 510.0 460 56.5
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.4e-109 401.0 356 56.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.5e-92 344.0 307 58.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 9.8e-71 272.7 205 65.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.8e-68 263.1 168 73.8
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.5e-50 205.7 167 61.7
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.4e-48 199.1 161 60.9
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.6e-39 168.3 193 49.7
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.9e-38 164.1 217 44.7
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.6e-28 132.5 149 42.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.1e-28 132.1 121 56.2
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.0e-27 129.8 85 68.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 6.9e-24 117.1 69 79.7
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 5.8e-23 114.0 88 63.6
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 3.8e-22 111.3 90 60.0
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 4.3e-18 97.8 106 49.1
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 9.6e-18 96.7 72 59.7
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.8e-15 87.4 275 26.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 7.6e-15 87.0 325 25.5
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.1e-13 80.5 328 25.3
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.2e-12 79.7 315 25.1
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.0e-11 76.6 94 45.7
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.8e-11 75.9 328 24.1
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-10 73.2 64 53.1
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.3e-08 64.3 311 23.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.3e-08 64.3 312 24.4
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.2e-07 63.2 83 44.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.5e-07 62.8 312 26.0
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.9e-07 60.8 307 23.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 7.6e-07 60.5 326 23.0
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-06 59.7 33 72.7
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.3e-06 59.7 211 23.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.2e-06 58.9 193 25.9


User provided reference genes

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