Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011698 Daucus carota HOM05D005403 ORTHO05D006572 1.6e-39 165.6 81 100.0
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 3.4e-26 121.3 65 86.2
CDE07G0028 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 3.5e-23 111.3 65 78.5
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 4.6e-23 110.9 74 75.7
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 4.6e-23 110.9 65 76.9
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 4.6e-23 110.9 65 81.5
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 4.6e-23 110.9 74 77.0
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 5.9e-23 110.5 65 78.5
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 5.9e-23 110.5 65 78.5
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 7.8e-23 110.2 65 81.5
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 7.8e-23 110.2 65 76.9
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 7.8e-23 110.2 65 78.5
Cfa006448 Carpinus fangiana HOM05D005403 ORTHO05D006572 1.0e-22 109.8 65 78.5
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 1.0e-22 109.8 65 78.5
FAN05G1135 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.0e-22 109.8 65 80.0
FAN05G5291 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.0e-22 109.8 65 80.0
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 1.3e-22 109.4 65 76.9
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 1.7e-22 109.0 74 75.7
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 1.7e-22 109.0 65 76.9
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 1.7e-22 109.0 65 78.5
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 2.3e-22 108.6 74 74.3
Gohir.D13G175800 Gossypium hirsutum HOM05D005403 ORTHO05D006572 3.0e-22 108.2 74 74.3
QL03p025001 Quercus lobata HOM05D005403 ORTHO05D006572 3.0e-22 108.2 74 73.0
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 3.0e-22 108.2 65 76.9
TAR365G0414 Trochodendron aralioides HOM05D005403 ORTHO05D006572 3.0e-22 108.2 65 76.9
vmacro05240 Vaccinium macrocarpon HOM05D005403 ORTHO05D006572 3.0e-22 108.2 65 75.4
ATR0665G176 Amborella trichopoda HOM05D005403 ORTHO05D006572 3.9e-22 107.8 73 69.9
Sabra13G0036900 Salix brachista HOM05D005403 ORTHO05D006572 3.9e-22 107.8 65 80.0
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 5.0e-22 107.5 65 80.0
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 6.6e-22 107.1 65 75.4
TPR.G32522 Trifolium pratense HOM05D005403 ORTHO05D006572 6.6e-22 107.1 74 73.0
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 8.6e-22 106.7 65 73.8
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 8.6e-22 106.7 65 78.5
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 8.6e-22 106.7 74 70.3
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 73.8
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 78.5
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 78.5
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 78.5
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 76.9
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 1.1e-21 106.3 65 76.9
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 1.5e-21 105.9 65 76.9
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 1.5e-21 105.9 65 75.4
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 1.5e-21 105.9 65 78.5
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 1.5e-21 105.9 74 73.0
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.5e-21 105.9 65 76.9
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 1.5e-21 105.9 74 73.0
AL3G14940 Arabidopsis lyrata HOM05D005403 ORTHO05D006572 1.9e-21 105.5 74 71.6
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 1.9e-21 105.5 74 71.6
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 1.9e-21 105.5 74 71.6
Carub.0003s0395 Capsella rubella HOM05D005403 ORTHO05D006572 1.9e-21 105.5 74 71.6
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 1.9e-21 105.5 65 76.9
Sp3g03620 Schrenkiella parvula HOM05D005403 ORTHO05D006572 1.9e-21 105.5 74 71.6
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 2.5e-21 105.1 74 71.6
Thhalv10021632m.g Eutrema salsugineum HOM05D005403 ORTHO05D006572 2.5e-21 105.1 74 71.6
Nitab4.5_0005582g0040 Nicotiana tabacum HOM05D005403 ORTHO05D006572 2.5e-21 105.1 65 75.4
Sed0002619 Sechium edule HOM05D005403 ORTHO05D006572 2.5e-21 105.1 65 76.9
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 3.3e-21 104.8 65 75.4
Nitab4.5_0004469g0080 Nicotiana tabacum HOM05D005403 ORTHO05D006572 3.3e-21 104.8 65 73.8
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 3.3e-21 104.8 65 76.9
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 3.3e-21 104.8 74 73.0
BolC1t05726H Brassica oleracea HOM05D005403 ORTHO05D006572 4.3e-21 104.4 74 70.3
BraA01t04505Z Brassica rapa HOM05D005403 ORTHO05D006572 4.3e-21 104.4 74 70.3
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 4.3e-21 104.4 65 73.8
Rhsim10G0108600 Rhododendron simsii HOM05D005403 ORTHO05D006572 4.3e-21 104.4 65 72.3
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 5.6e-21 104.0 65 75.4
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 5.6e-21 104.0 74 70.3
BcaB04g21347 Brassica carinata HOM05D005403 ORTHO05D006572 7.3e-21 103.6 74 70.3
BcaNung06422 Brassica carinata HOM05D005403 ORTHO05D006572 7.3e-21 103.6 74 70.3
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 7.3e-21 103.6 74 68.9
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 7.3e-21 103.6 74 68.9
Sabra05G0045800 Salix brachista HOM05D005403 ORTHO05D006572 7.3e-21 103.6 65 76.9
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 7.3e-21 103.6 65 73.8
CAN.G134.109 Capsicum annuum HOM05D005403 ORTHO05D006572 9.5e-21 103.2 65 75.4
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 9.5e-21 103.2 65 75.4
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 9.5e-21 103.2 66 75.8
BNapus_Darmor_BZH_scaffold_78p01010 Brassica napus HOM05D005403 ORTHO05D006572 1.2e-20 102.8 74 70.3
CARHR079030 Cardamine hirsuta HOM05D005403 ORTHO05D006572 1.2e-20 102.8 74 70.3
AT3G04780 Arabidopsis thaliana HOM05D005403 ORTHO05D006572 1.6e-20 102.4 74 70.3
MD12G1238700 Malus domestica HOM05D005403 ORTHO05D006572 1.6e-20 102.4 65 75.4
Medtr1g080960 Medicago truncatula HOM05D005403 ORTHO05D006572 1.6e-20 102.4 74 71.6
Psat6g146440 Pisum sativum HOM05D005403 ORTHO05D006572 1.6e-20 102.4 74 71.6
Zm00001eb060640 Zea mays HOM05D005403 ORTHO05D006572 1.6e-20 102.4 68 76.5
Aa31LG5G15180 Aethionema arabicum HOM05D005403 ORTHO05D006572 2.8e-20 101.7 74 68.9
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 2.8e-20 101.7 74 68.9
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 3.6e-20 101.3 74 68.9
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 3.6e-20 101.3 65 73.8
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 3.6e-20 101.3 74 68.9
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 3.6e-20 101.3 65 73.8
Zm00001eb213000 Zea mays HOM05D005403 ORTHO05D006572 3.6e-20 101.3 68 72.1
ClCG02G016540 Citrullus lanatus HOM05D005403 ORTHO05D006572 4.7e-20 100.9 65 73.8
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 4.7e-20 100.9 74 68.9
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 4.7e-20 100.9 74 68.9
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 4.7e-20 100.9 74 68.9
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 4.7e-20 100.9 65 73.8
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 4.7e-20 100.9 74 68.9
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 6.2e-20 100.5 65 75.4
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 6.2e-20 100.5 65 72.3
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 1.4e-19 99.4 65 72.3
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 1.4e-19 99.4 74 66.2
Os03g0795500 Oryza sativa ssp. japonica HOM05D005403 ORTHO05D006572 1.4e-19 99.4 66 71.2
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 1.8e-19 99.0 76 68.4
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 1.8e-19 99.0 65 73.8
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 2.3e-19 98.6 74 67.6
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 4.0e-19 97.8 79 59.5
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 1.2e-18 96.3 65 66.2
Sed0000415 Sechium edule HOM05D005403 ORTHO05D006572 2.0e-18 95.5 65 69.2
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 2.6e-18 95.1 69 69.6
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 3.4e-18 94.7 74 63.5
Gohir.A11G253700 Gossypium hirsutum HOM05D005403 ORTHO05D006572 7.5e-18 93.6 74 68.9
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 7.5e-18 93.6 65 66.2
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 3.7e-17 91.3 65 69.2
Mapoly0034s0051 Marchantia polymorpha HOM05D005403 ORTHO05D006572 6.4e-17 90.5 80 57.5
Gorai.007G283600 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.1e-16 89.7 74 67.6
Gohir.D11G263600 Gossypium hirsutum HOM05D005403 ORTHO05D006572 2.4e-16 88.6 74 66.2
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 4.1e-16 87.8 65 55.4
Atru.chr2.798 Acer truncatum HOM05D005403 ORTHO05D006572 5.4e-16 87.4 50 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2056 Anthoceros agrestis HOM05D005403 ORTHO05D006572 9.2e-16 86.7 65 60.0
EL10Ac4g09116 Beta vulgaris HOM05D005403 ORTHO05D006572 1.5e-13 79.3 53 69.8
CBR_g8269 Chara braunii HOM05D005403 ORTHO05D006572 2.3e-11 72.0 58 58.6
Sopen04g005140 Solanum pennellii HOM05D005403 ORTHO05D006572 1.3e-09 66.2 62 48.4
Solyc04g010030.1 Solanum lycopersicum HOM05D005403 ORTHO05D006572 2.9e-09 65.1 54 50.0
Potri.005G052100 Populus trichocarpa HOM05D005403 ORTHO05D006572 3.7e-09 64.7 38 76.3
Sopen04g005160 Solanum pennellii HOM05D005403 ORTHO05D006572 3.7e-09 64.7 54 50.0
Pp3c6_27050 Physcomitrium patens HOM05D005403 ORTHO05D006572 4.9e-09 64.3 47 57.4
Solyc04g010010.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 4.9e-09 64.3 62 46.8
Lsat_1_v5_gn_4_137100 Lactuca sativa HOM05D005403 ORTHO05D006572 1.6e-07 59.3 52 51.9
Cre17.g730250 Chlamydomonas reinhardtii HOM05D005403 ORTHO05D006572 2.1e-07 58.9 66 43.9


User provided reference genes

Program Settings