Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 5.3e-83 310.8 142 100.0
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.3e-69 265.0 134 82.8
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 4.3e-69 264.6 134 82.8
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 4.3e-69 264.6 134 82.8
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.1e-67 258.5 139 77.0
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.0e-67 258.1 134 80.6
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.6e-66 255.4 139 77.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.5e-66 254.6 134 79.9
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.0e-65 253.4 141 77.3
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.0e-65 253.4 134 78.4
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.4e-64 249.6 135 78.5
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.9e-64 249.2 133 79.7
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.2e-64 248.4 135 76.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 3.2e-64 248.4 134 76.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 4.2e-64 248.1 139 74.8
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 7.1e-64 247.3 136 75.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 9.3e-64 246.9 135 77.8
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.2e-63 246.5 135 76.3
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 75.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.1e-63 245.7 135 76.3
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.5e-63 245.0 140 73.6
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 4.6e-63 244.6 134 73.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 6.0e-63 244.2 135 74.8
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 7.9e-63 243.8 134 74.6
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.9e-63 243.8 135 73.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.0e-62 243.4 135 76.3
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-62 243.0 135 75.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.8e-62 242.7 134 75.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.3e-62 242.3 135 74.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 75.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 5.1e-62 241.1 131 76.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 6.7e-62 240.7 135 74.1
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 6.7e-62 240.7 135 74.1
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 73.3
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.1e-61 240.0 135 74.8
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 74.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 73.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 3.3e-61 238.4 135 74.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.3e-61 238.0 134 74.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 5.7e-61 237.7 134 72.4
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 5.7e-61 237.7 137 72.3
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.7e-61 236.9 135 72.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 9.7e-61 236.9 134 73.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 9.7e-61 236.9 134 72.4
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 9.7e-61 236.9 135 71.9
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-60 236.5 135 72.6
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.6e-60 236.1 134 73.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.6e-60 236.1 135 71.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.1e-60 235.7 129 74.4
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.8e-60 235.3 135 69.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-60 235.3 135 71.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.7e-60 235.0 135 73.3
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 6.3e-60 234.2 131 74.8
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.3e-60 234.2 135 71.9
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.4e-59 233.0 131 74.8
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.4e-59 232.3 134 71.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.4e-59 232.3 135 71.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 3.1e-59 231.9 137 69.3
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 4.1e-59 231.5 135 69.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 5.3e-59 231.1 135 68.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 5.3e-59 231.1 133 69.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.9e-59 230.7 139 67.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.9e-59 230.7 135 69.6
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 6.9e-59 230.7 125 75.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 6.9e-59 230.7 134 69.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 9.0e-59 230.3 134 71.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 69.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 71.1
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-58 229.2 135 71.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 2.0e-58 229.2 130 71.5
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.0e-58 229.2 173 60.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.6e-58 228.8 136 68.4
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-58 228.4 135 68.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-58 228.4 135 69.6
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 4.5e-58 228.0 134 71.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 7.6e-58 227.3 135 68.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.6e-58 227.3 135 68.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.0e-57 226.9 134 70.1
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 68.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 69.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.0e-57 226.9 135 70.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 69.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.9e-57 225.3 131 71.8
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 67.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.8e-57 224.9 132 70.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.1e-56 223.4 133 72.2
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.1e-56 223.4 134 66.4
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.1e-56 223.4 129 70.5
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 67.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 67.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.9e-56 222.6 124 73.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-56 221.9 134 67.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.5e-56 221.1 134 67.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.2e-56 220.7 128 69.5
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.3e-56 220.3 121 73.6
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.2e-55 219.9 134 64.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.7e-55 218.8 134 66.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.7e-55 218.8 134 66.4
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 2.7e-55 218.8 137 66.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.7e-55 218.8 140 64.3
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.6e-55 218.4 134 67.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 6.1e-55 217.6 135 68.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 6.1e-55 217.6 131 67.9
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 64.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 65.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.3e-54 215.7 120 76.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.3e-54 215.7 131 67.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.0e-54 215.3 128 69.5
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 8.7e-54 213.8 133 65.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 8.7e-54 213.8 121 72.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.5e-53 212.2 134 63.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.5e-53 212.2 121 71.9
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.3e-53 211.8 133 64.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 3.3e-53 211.8 133 64.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.8e-52 208.8 124 68.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 3.7e-52 208.4 133 63.9
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.8e-52 208.0 124 66.9
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-51 206.8 120 69.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.8e-51 206.1 129 65.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.6e-50 202.2 134 64.9
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.0e-49 200.3 130 63.8
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 6.5e-49 197.6 121 66.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.5e-49 197.6 129 62.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.1e-48 196.8 116 68.1
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.5e-48 194.5 123 65.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.4e-48 193.7 130 60.8
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.7e-47 192.2 129 62.8
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 6.1e-47 191.0 129 60.5
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.1e-47 191.0 135 58.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-45 186.4 135 61.5
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-44 183.3 130 59.2
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 4.8e-44 181.4 108 65.7
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.3e-44 181.0 130 58.5
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 3.1e-43 178.7 103 69.9
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 5.9e-42 174.5 96 77.1
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.4e-40 169.9 136 58.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.6e-39 166.4 126 57.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.0e-38 163.7 96 76.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.7e-38 161.0 117 58.1
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-37 160.2 124 56.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.2e-34 150.2 75 85.3
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-34 149.4 98 65.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.0e-34 149.4 141 46.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.5e-34 148.3 85 72.9
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 2.2e-28 129.4 74 77.0
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-26 123.2 70 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-25 118.2 112 49.1
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-22 109.4 63 73.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.4e-21 105.1 78 57.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.7e-18 95.9 79 54.4


User provided reference genes

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