Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 0.0e+00 2100.9 1087 100.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1107.8 1143 55.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.4e-284 983.4 1143 52.4
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 6.9e-284 981.1 1155 50.8
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.2e-283 980.3 1125 50.6
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.4e-273 946.8 1134 49.7
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 4.7e-272 941.8 1131 48.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.0e-271 939.1 1125 49.2
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.0e-271 939.1 1125 49.2
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 3.9e-271 938.7 1130 48.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.5e-270 936.8 1143 49.0
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-270 936.4 1136 48.8
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 4.8e-269 931.8 1138 48.5
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 8.2e-269 931.0 1104 50.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 3.1e-268 929.1 1140 48.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 1.0e-266 924.1 1115 48.4
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.7e-266 923.3 1132 48.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.2e-266 922.9 1142 47.7
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.5e-266 921.4 1118 48.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.5e-265 920.2 1135 48.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.5e-265 918.3 1135 48.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 4.7e-264 915.2 1122 48.4
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 6.1e-264 914.8 1126 49.1
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.1e-260 904.0 1120 47.9
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.8e-260 903.3 1121 47.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 5.3e-260 901.7 1112 48.5
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.5e-259 899.0 1117 47.3
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.5e-259 899.0 1129 46.9
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 4.5e-259 898.7 1114 47.5
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 6.5e-258 894.8 1110 47.7
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 4.7e-256 888.6 1120 46.4
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 2.3e-255 886.3 1134 47.8
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 3.4e-254 882.5 1142 46.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 7.5e-254 881.3 1155 46.6
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.7e-253 879.0 1120 47.9
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 9.1e-252 874.4 1134 46.5
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 8.5e-250 867.8 1121 47.0
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.9e-249 866.7 1124 45.6
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 9.4e-249 864.4 1114 46.5
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.6e-248 863.6 1129 46.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 6.1e-248 861.7 1145 47.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.0e-248 861.3 1099 47.5
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 2.3e-247 859.8 1101 48.0
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 8.8e-247 857.8 1128 46.5
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.0e-246 856.7 1114 46.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.8e-245 852.8 1208 43.8
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.3e-245 851.3 1125 45.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 8.3e-245 851.3 1132 45.8
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1116 46.6
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 3.1e-244 849.4 1120 45.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.1e-244 849.0 1126 45.8
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 2.7e-243 846.3 1103 45.9
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 5.9e-243 845.1 1123 45.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1123 46.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 3.8e-242 842.4 1014 49.3
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.9e-241 840.1 1196 43.2
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.8e-240 836.3 1142 44.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.2e-238 830.9 1111 46.9
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.3e-237 827.4 1149 44.3
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 3.2e-236 822.8 1108 46.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.3e-234 817.4 1104 45.0
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 2.9e-234 816.2 1101 46.0
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1046 46.0
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 4.3e-233 812.4 1102 45.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.3e-233 812.4 997 48.7
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.2e-228 796.2 1144 43.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 5.4e-228 795.4 1137 44.0
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.6e-226 788.5 978 47.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 2.8e-224 783.1 1129 43.0
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 3.6e-224 782.7 1160 43.7
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 4.4e-222 775.8 1114 43.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 9.8e-222 774.6 988 47.2
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.9e-221 773.1 1085 45.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 4.1e-220 769.2 1147 42.5
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 7.3e-217 758.4 1127 42.3
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 6.8e-215 751.9 1113 42.3
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 4.4e-214 749.2 1116 42.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.3e-213 747.7 1116 43.1
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.7e-213 747.3 1134 42.9
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 4.9e-213 745.7 1110 42.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.4e-212 744.2 1151 42.4
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 7.1e-212 741.9 1113 42.2
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 9.2e-212 741.5 966 46.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.2e-211 741.1 1125 41.8
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-211 741.1 1112 42.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.2e-211 741.1 1125 41.8
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-210 738.0 1124 41.6
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.3e-210 737.6 719 58.4
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.7e-210 737.3 1126 41.6
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.3e-209 731.9 1159 41.2
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.6e-208 729.6 1138 41.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 6.2e-208 728.8 1125 41.6
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-207 728.0 1126 40.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 5.8e-206 722.2 1125 41.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.3e-205 721.1 1123 40.6
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.9e-205 719.9 1126 41.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 6.4e-205 718.8 1126 40.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-204 718.0 1126 40.8
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 5.1e-202 709.1 1129 39.4
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.9e-201 707.2 1159 39.7
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.3e-201 705.3 1109 40.2
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.3e-200 704.5 733 54.4
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 6.9e-199 698.7 673 56.8
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.4e-198 696.4 1139 39.8
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 7.6e-198 695.3 865 49.1
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 9.9e-198 694.9 1138 39.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.2e-196 689.5 1045 41.4
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.3e-193 679.9 1123 39.5
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.7e-187 660.2 706 53.1
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.9e-187 658.7 708 52.8
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.0e-186 658.3 1141 39.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.3e-184 651.4 669 55.3
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.1e-184 650.6 777 49.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.8e-178 630.9 896 45.0
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 3.0e-178 630.2 836 46.5
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.5e-172 610.5 526 61.4
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 7.2e-172 609.0 461 66.8
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.6e-168 597.8 500 63.0
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 8.8e-162 575.5 849 42.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.5e-161 574.7 1115 37.0
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.0e-154 552.0 895 41.0
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 2.6e-153 547.4 647 49.0
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.0e-149 535.4 881 40.3
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 6.5e-141 506.1 723 44.0
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 8.0e-139 499.2 650 47.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.8e-136 490.7 956 36.6
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.7e-117 428.3 712 40.3
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.5e-116 425.2 639 40.2
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 4.3e-116 423.7 792 37.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-114 417.9 246 85.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-114 417.9 246 85.4
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.4e-95 353.6 611 39.1
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 7.1e-95 353.2 611 39.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 7.8e-94 349.7 328 55.8
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.2e-87 327.4 206 80.6
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-73 282.3 411 41.4
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.1e-60 239.6 221 55.7
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-52 213.0 142 76.1
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.2e-47 194.5 674 27.4
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 7.2e-47 193.7 581 29.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 9.4e-39 166.8 383 33.9
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-37 162.5 184 53.3
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-35 156.4 91 85.7
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.9e-31 142.5 159 55.3
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.7e-30 138.7 91 72.5
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.2e-23 115.2 152 41.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 7.2e-23 114.0 125 46.4
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.1e-18 100.1 67 68.7
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.1e-15 90.1 404 27.0
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-09 70.1 275 27.6
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 1.7e-08 66.2 95 41.1
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.8e-06 58.9 110 31.8


User provided reference genes

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