Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 2.4e-63 245.4 127 100.0
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 6.3e-19 97.8 63 73.0
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 6.3e-19 97.8 63 73.0
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 1.8e-18 96.3 66 69.7
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 3.1e-18 95.5 69 65.2
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.2e-17 93.6 63 68.3
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 1.2e-17 93.6 59 76.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 2.0e-17 92.8 63 74.6
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 2.0e-17 92.8 73 63.0
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.0e-17 92.8 69 66.7
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.6e-17 92.4 64 71.9
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 2.6e-17 92.4 63 66.7
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 2.6e-17 92.4 67 61.2
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.9e-17 91.3 58 75.9
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.0e-16 90.5 63 73.0
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.3e-16 90.1 63 71.4
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.9e-16 89.0 63 71.4
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 5.0e-16 88.2 63 68.3
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 5.0e-16 88.2 63 68.3
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.0e-16 88.2 58 74.1
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 6.5e-16 87.8 63 69.8
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.5e-16 87.4 63 71.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.5e-16 87.4 63 69.8
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.5e-16 87.4 63 71.4
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 8.5e-16 87.4 63 69.8
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 8.5e-16 87.4 63 71.4
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 8.5e-16 87.4 58 74.1
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.1e-15 87.0 64 65.6
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 1.1e-15 87.0 63 68.3
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.4e-15 86.7 66 63.6
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.4e-15 86.7 63 66.7
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.4e-15 86.7 63 66.7
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.4e-15 86.7 85 55.3
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 1.9e-15 86.3 60 66.7
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.9e-15 86.3 68 61.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 2.5e-15 85.9 63 65.1
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 2.5e-15 85.9 69 59.4
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.2e-15 85.1 60 71.7
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 7.2e-15 84.3 63 68.3
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 7.2e-15 84.3 61 65.6
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 9.4e-15 84.0 76 56.6
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.2e-14 83.6 58 70.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.2e-14 83.6 63 65.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.6e-14 83.2 56 67.9
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.6e-14 83.2 61 65.6
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 3.6e-14 82.0 69 56.5
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 4.6e-14 81.6 60 65.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.6e-14 81.6 59 64.4
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 6.1e-14 81.3 63 58.7
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.4e-13 80.1 59 61.0
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 2.3e-13 79.3 58 67.2
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.3e-13 79.3 63 61.9
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 3.0e-13 79.0 55 65.5
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 3.0e-13 79.0 55 65.5
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 3.0e-13 79.0 58 63.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.1e-13 78.2 74 54.1
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.1e-13 78.2 64 56.2
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 6.7e-13 77.8 63 58.7
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.7e-13 77.8 63 58.7
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 1.1e-12 77.0 65 60.0
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.5e-12 76.6 55 65.5
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.9e-12 76.3 76 55.3
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 2.5e-12 75.9 68 55.9
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 3.3e-12 75.5 56 60.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 3.3e-12 75.5 68 55.9
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 4.3e-12 75.1 58 65.5
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 5.7e-12 74.7 62 58.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 5.7e-12 74.7 60 65.0
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 9.7e-12 73.9 58 65.5
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.7e-11 73.2 62 62.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.7e-11 73.2 69 50.7
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.7e-11 73.2 72 54.2
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.7e-11 73.2 62 62.9
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.7e-11 73.2 59 62.7
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.2e-11 72.8 63 61.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 2.2e-11 72.8 69 52.2
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.8e-11 72.4 58 65.5
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.8e-11 72.4 63 61.9
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.7e-11 72.0 63 60.3
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.7e-11 72.0 63 60.3
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 3.7e-11 72.0 58 62.1
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 3.7e-11 72.0 62 54.8
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 4.8e-11 71.6 58 62.1
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.3e-11 71.2 57 56.1
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.3e-11 71.2 66 57.6
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 8.2e-11 70.9 58 58.6
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.2e-11 70.9 65 52.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-10 70.5 60 65.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.4e-10 70.1 63 60.3
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 2.4e-10 69.3 75 49.3
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 2.4e-10 69.3 75 49.3
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 3.1e-10 68.9 70 51.4
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 3.1e-10 68.9 70 51.4
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 6.9e-10 67.8 75 48.0
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.2e-09 67.0 58 51.7
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.6e-09 65.9 54 57.4
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.6e-09 65.9 63 50.8
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.6e-09 65.9 66 50.0
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.4e-09 65.5 61 60.7
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.5e-09 65.1 63 52.4
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 4.5e-09 65.1 58 53.4
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 5.9e-09 64.7 66 48.5
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 7.7e-09 64.3 58 55.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-08 63.5 64 51.6
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.7e-08 63.2 63 50.8
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 5.0e-08 61.6 64 50.0
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.5e-08 61.2 65 47.7
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.1e-07 60.5 57 50.9
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.9e-07 59.7 70 40.0
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.9e-07 59.7 65 47.7
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 3.2e-07 58.9 66 47.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 3.2e-07 58.9 58 51.7
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 3.2e-07 58.9 87 41.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 3.2e-07 58.9 58 50.0
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 4.2e-07 58.5 39 64.1
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 5.5e-07 58.2 63 44.4
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 7.2e-07 57.8 36 72.2
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.2e-06 57.0 58 50.0
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.7e-06 55.8 74 40.5


User provided reference genes

Program Settings