Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 6.8e-41 170.2 87 100.0
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 1.1e-22 109.8 87 66.7
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 5.4e-22 107.5 88 63.6
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 9.2e-22 106.7 85 63.5
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 2.1e-21 105.5 78 66.7
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 2.7e-21 105.1 78 66.7
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 4.6e-21 104.4 88 61.4
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 6.0e-21 104.0 74 71.6
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 6.0e-21 104.0 85 64.7
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 7.8e-21 103.6 84 64.3
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 2.3e-20 102.1 86 62.8
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 3.9e-20 101.3 75 66.7
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 8.6e-20 100.1 86 59.3
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 8.6e-20 100.1 85 63.5
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 1.1e-19 99.8 86 60.5
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.5e-19 99.4 87 57.5
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 1.5e-19 99.4 76 64.5
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 2.5e-19 98.6 68 70.6
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.5e-19 98.6 83 63.9
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 3.3e-19 98.2 69 66.7
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 5.6e-19 97.4 87 59.8
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 9.5e-19 96.7 83 56.6
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 1.6e-18 95.9 80 62.5
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 1.6e-18 95.9 88 59.1
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 2.8e-18 95.1 87 56.3
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 3.6e-18 94.7 74 64.9
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 3.6e-18 94.7 74 63.5
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 3.6e-18 94.7 90 58.9
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 6.2e-18 94.0 79 58.2
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.1e-17 93.2 74 63.5
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.4e-17 92.8 71 64.8
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.4e-17 92.8 71 64.8
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 1.4e-17 92.8 89 58.4
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.4e-17 92.8 58 72.4
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.8e-17 92.4 81 59.3
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 4.0e-17 91.3 87 54.0
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 5.2e-17 90.9 71 63.4
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 5.2e-17 90.9 86 55.8
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 6.8e-17 90.5 71 63.4
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 6.8e-17 90.5 86 55.8
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 6.8e-17 90.5 81 59.3
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 6.8e-17 90.5 73 67.1
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 6.8e-17 90.5 69 66.7
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 8.9e-17 90.1 71 62.0
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 8.9e-17 90.1 83 60.2
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.2e-16 89.7 87 56.3
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 1.5e-16 89.4 71 62.0
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 1.5e-16 89.4 88 58.0
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 2.0e-16 89.0 71 62.0
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.0e-16 89.0 86 52.3
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 2.0e-16 89.0 83 56.6
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 2.6e-16 88.6 71 62.0
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 2.6e-16 88.6 86 54.7
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 2.6e-16 88.6 87 55.2
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 2.6e-16 88.6 87 55.2
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 3.4e-16 88.2 72 61.1
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 3.4e-16 88.2 88 53.4
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 4.4e-16 87.8 74 60.8
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 5.8e-16 87.4 57 64.9
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 7.6e-16 87.0 70 61.4
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 7.6e-16 87.0 55 69.1
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 1.3e-15 86.3 69 62.3
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 1.7e-15 85.9 71 60.6
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 2.2e-15 85.5 91 57.1
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 6.4e-15 84.0 64 60.9
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 6.4e-15 84.0 64 60.9
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 6.4e-15 84.0 81 44.4
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 8.4e-15 83.6 88 55.7
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 8.4e-15 83.6 89 53.9
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 1.4e-14 82.8 79 55.7
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 1.4e-14 82.8 66 59.1
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 1.6e-13 79.3 92 50.0
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 2.1e-13 79.0 56 75.0
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 2.1e-13 79.0 87 47.1
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 6.0e-13 77.4 74 54.1
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 1.0e-12 76.6 64 50.0
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 1.3e-12 76.3 49 73.5
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 8.7e-12 73.6 74 47.3
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 1.9e-11 72.4 72 55.6
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 1.9e-11 72.4 53 67.9
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 4.3e-11 71.2 42 71.4
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 2.1e-10 68.9 47 63.8
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 3.6e-10 68.2 56 55.4
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 6.2e-10 67.4 49 69.4
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 1.8e-09 65.9 63 42.9
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 4.0e-09 64.7 44 68.2
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 2.0e-08 62.4 52 57.7
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 4.4e-08 61.2 41 68.3
Oeu060284.1 Olea europaea HOM05D007707 ORTHO05D009711 4.9e-07 57.8 85 47.1
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 2.4e-06 55.5 51 52.9
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 4.2e-06 54.7 36 63.9
PSO170G0729 Papaver somniferum HOM05D066428 ORTHO05D009711 5.4e-06 54.3 89 37.1
PSO700G0322 Papaver somniferum HOM05D066428 ORTHO05D009711 7.1e-06 53.9 93 37.6


User provided reference genes

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