Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.5e-294 1016.1 851 100.0
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.7e-157 560.8 796 54.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 1.7e-128 464.5 780 49.0
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.5e-127 460.7 786 50.3
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.6e-126 458.0 797 52.7
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 5.3e-122 443.0 794 54.2
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.7e-120 438.0 783 53.9
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 5.0e-120 436.4 795 50.6
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.0e-117 428.7 783 49.6
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.8e-117 427.9 772 47.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.1e-116 425.2 787 42.7
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.5e-116 424.9 786 51.0
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 4.4e-116 423.3 784 50.6
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 7.4e-116 422.5 784 54.7
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.7e-115 421.4 779 55.8
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.2e-115 421.0 779 55.7
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 2.8e-115 420.6 810 48.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 8.2e-115 419.1 828 45.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.4e-114 417.5 792 47.7
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.4e-114 417.5 447 57.0
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.3e-114 416.4 779 46.7
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.5e-113 413.3 797 56.2
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.9e-111 407.9 783 47.3
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.1e-110 404.4 779 50.7
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 2.7e-110 404.1 784 47.1
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 8.0e-110 402.5 771 47.5
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 8.0e-110 402.5 769 46.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.5e-108 398.3 738 46.6
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-108 397.9 743 48.0
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.6e-108 397.5 743 48.2
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.6e-108 397.5 782 47.8
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 5.7e-108 396.4 803 44.3
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 5.3e-106 389.8 784 45.8
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 9.1e-106 389.0 745 47.9
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 9.1e-106 389.0 761 49.8
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 5.9e-105 386.3 784 44.4
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.2e-104 384.4 793 49.8
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 8.5e-104 382.5 793 46.0
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 4.2e-103 380.2 763 48.4
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 7.2e-103 379.4 794 49.0
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.7e-102 377.5 783 48.5
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 4.7e-102 376.7 760 43.6
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.0e-101 374.0 768 41.5
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 8.8e-101 372.5 786 51.3
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.2e-100 372.1 765 46.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.5e-100 371.7 765 49.0
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.4e-100 370.2 754 47.5
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 9.8e-100 369.0 769 51.4
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 6.3e-99 366.3 775 52.8
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.0e-98 362.8 765 48.6
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 9.1e-98 362.5 791 44.1
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.0e-97 361.3 772 47.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 3.5e-97 360.5 784 50.6
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.0e-96 359.0 788 53.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.8e-96 357.1 765 48.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.9e-95 354.8 785 52.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.9e-95 354.8 817 43.9
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.5e-95 354.4 766 49.3
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.2e-94 352.1 775 44.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.1e-94 351.3 802 44.4
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.0e-93 349.0 781 44.7
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 3.0e-93 347.4 758 47.5
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.7e-91 341.7 768 54.9
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 8.3e-91 339.3 759 52.3
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.1e-90 339.0 785 42.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.4e-90 337.8 434 48.8
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.4e-90 337.8 790 47.5
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.1e-90 335.9 807 43.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.2e-86 325.5 763 43.0
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.2e-86 325.5 783 44.3
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 4.7e-86 323.6 783 43.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 8.9e-85 319.3 828 49.2
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.2e-84 318.9 772 39.2
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 4.4e-84 317.0 761 48.9
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.9e-83 314.3 785 42.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 4.9e-83 313.5 767 45.6
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 4.9e-83 313.5 767 45.6
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.1e-82 312.4 783 43.0
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.7e-81 307.8 769 43.8
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 3.5e-81 307.4 768 46.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 4.6e-81 307.0 438 48.6
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 5.9e-81 306.6 785 40.9
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.0e-80 305.8 733 43.8
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.0e-80 305.8 733 43.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 6.6e-80 303.1 694 45.7
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.5e-79 302.0 443 48.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 5.6e-79 300.1 445 47.6
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 5.6e-79 300.1 751 42.6
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.6e-78 298.5 744 44.0
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 8.9e-77 292.7 752 39.5
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 5.8e-76 290.0 743 38.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.7e-75 288.5 418 48.6
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.7e-73 281.2 810 45.6
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.5e-73 280.8 744 39.0
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.7e-67 261.9 790 38.6
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 2.5e-63 248.1 786 40.5
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.2e-60 239.2 447 42.7
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 9.9e-52 209.5 446 39.2
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.9e-51 208.0 237 52.7
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.9e-51 207.2 445 36.0
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.2e-49 202.6 783 34.5
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.0e-48 199.5 451 35.3
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.3e-48 199.1 237 51.1
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.3e-48 199.1 565 30.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 5.3e-45 187.2 190 60.5
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 3.8e-43 181.0 202 53.0
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.5e-41 174.5 458 34.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.0e-37 159.8 209 46.4
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.2e-34 151.4 457 39.2
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.8e-30 138.3 132 59.8
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 3.2e-26 124.8 243 51.0
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-25 122.5 254 42.9
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.1e-23 116.3 137 54.7
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 3.3e-23 114.8 213 41.8
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 5.3e-21 107.5 562 42.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 6.9e-21 107.1 199 40.7
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.6e-20 103.6 201 34.8
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.0e-19 103.2 156 43.6
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.3e-19 102.8 130 49.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.2e-19 102.1 123 52.8
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 4.2e-18 97.8 128 46.1
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-16 92.0 178 37.6
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 2.8e-14 85.1 168 35.7
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 8.2e-14 83.6 125 44.8
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.2e-12 79.7 138 41.3
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-12 79.7 81 51.9
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.4e-12 78.2 245 58.4
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.4e-10 72.8 67 58.2
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.4e-10 72.8 67 58.2
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-09 69.3 95 64.2
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.7e-09 68.6 43 76.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 4.6e-09 67.8 44 77.3
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 6.1e-09 67.4 139 32.4
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 9.7e-07 60.1 47 68.1
ECA238G3708 Erigeron canadensis HOM05D012425 ORTHO05D014354 1.3e-06 59.7 85 45.9


User provided reference genes

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