Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.3e-154 548.9 283 100.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 3.7e-72 275.8 314 52.9
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.2e-71 272.7 310 53.2
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.6e-70 270.4 272 56.2
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 7.8e-70 268.1 262 55.7
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.5e-68 263.8 263 57.4
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.6e-67 260.4 285 53.7
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 1.6e-67 260.4 239 59.4
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.1e-67 260.0 305 53.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.8e-67 259.6 273 56.4
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 3.6e-67 259.2 225 61.8
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.6e-67 259.2 302 51.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 6.2e-67 258.5 276 52.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.4e-66 257.3 234 60.3
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.3e-66 256.5 186 71.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.3e-66 256.5 310 48.7
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 3.1e-66 256.1 275 55.3
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 8.9e-66 254.6 298 51.0
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.9e-66 254.6 221 59.7
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-65 254.2 234 59.4
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-65 254.2 234 59.4
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.2e-65 254.2 300 50.0
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.5e-65 253.8 316 49.7
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.6e-65 253.1 234 59.8
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.6e-65 253.1 234 59.8
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.6e-65 253.1 212 64.2
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 3.4e-65 252.7 184 71.7
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.4e-65 252.3 186 69.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.4e-65 252.3 301 50.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 7.5e-65 251.5 262 56.5
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.7e-64 250.4 261 55.9
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.2e-64 250.0 288 52.1
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 6.4e-64 248.4 185 69.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 8.3e-64 248.1 236 58.1
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.1e-63 247.7 226 58.8
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.4e-63 247.3 225 59.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.4e-63 247.3 223 58.3
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.9e-63 246.9 215 61.4
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.9e-63 246.9 334 47.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 3.2e-63 246.1 276 51.8
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 3.2e-63 246.1 244 59.8
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 7.1e-63 245.0 193 67.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 9.2e-63 244.6 175 72.0
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 9.2e-63 244.6 262 54.6
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 9.2e-63 244.6 182 67.6
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 9.2e-63 244.6 215 58.1
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.2e-62 244.2 260 53.5
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.7e-62 243.0 315 46.7
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 4.6e-62 242.3 223 58.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.6e-62 242.3 238 55.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.6e-62 242.3 286 51.4
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 7.8e-62 241.5 239 56.1
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.0e-61 241.1 239 56.5
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.0e-61 241.1 197 64.0
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.7e-61 240.4 315 47.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 3.0e-61 239.6 198 62.1
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 3.0e-61 239.6 225 58.7
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.9e-61 239.2 260 53.1
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.1e-61 238.8 228 57.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.9e-60 236.9 199 61.8
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.3e-60 235.7 298 49.7
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.6e-59 233.8 207 62.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.1e-58 231.1 204 58.8
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 6.8e-58 228.4 254 54.3
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.2e-57 227.6 165 68.5
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.4e-57 226.1 273 48.7
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.2e-56 223.4 257 49.4
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.9e-56 223.0 249 53.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 2.9e-56 223.0 280 50.0
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.9e-56 223.0 200 58.0
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 4.9e-56 222.2 231 53.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 4.9e-56 222.2 206 56.3
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 4.9e-56 222.2 225 55.1
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 8.4e-56 221.5 173 65.3
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.2e-55 219.5 211 53.1
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.1e-55 219.2 313 45.0
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 5.4e-55 218.8 243 51.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 9.2e-55 218.0 284 46.8
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 7.8e-54 214.9 214 54.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.9e-52 210.3 250 49.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.9e-52 210.3 250 49.6
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.1e-51 206.8 187 61.5
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.8e-51 206.5 192 56.2
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.6e-51 206.1 196 57.1
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.6e-51 206.1 192 56.2
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 8.1e-51 204.9 239 46.9
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 3.4e-49 199.5 166 61.4
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.4e-48 194.9 270 44.4
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 7.1e-47 191.8 183 57.4
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.1e-46 190.3 275 44.4
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.3e-45 186.8 266 41.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.6e-45 185.3 276 44.2
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 7.3e-44 181.8 261 43.7
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.8e-43 179.9 178 51.1
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.8e-42 177.2 165 57.6
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.1e-42 176.4 180 54.4
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.0e-42 174.9 175 54.3
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.8e-41 172.2 187 50.8
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-40 170.6 310 41.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.4e-40 168.7 276 40.9
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.9e-39 167.2 190 49.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 4.2e-39 166.0 123 69.1
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.6e-38 164.1 173 50.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 5.1e-37 159.1 160 51.9
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 5.1e-37 159.1 305 38.4
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.3e-36 156.4 199 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 5.6e-36 155.6 168 47.6
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.5e-33 147.5 283 37.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.6e-33 146.7 146 55.5
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.5e-33 146.0 185 45.4
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.2e-32 143.7 132 59.8
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.8e-32 142.9 227 42.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 6.4e-32 142.1 200 44.0
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 3.2e-31 139.8 170 46.5
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.1e-31 138.7 101 70.3
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.1e-30 137.1 170 45.9
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.1e-30 137.1 170 46.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-30 137.1 111 66.7
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 4.6e-30 136.0 170 45.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.0e-29 134.8 185 41.1
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.8e-29 134.0 107 64.5
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.1e-29 132.5 168 46.4
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.7e-29 132.1 103 67.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.9e-28 130.6 97 71.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.3e-28 129.8 156 46.8
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.3e-28 129.4 200 41.5
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 5.6e-28 129.0 286 36.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 7.4e-28 128.6 186 36.0
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-27 127.1 170 43.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.1e-27 127.1 112 58.0
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.7e-27 126.3 105 55.2
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-26 124.8 88 69.3
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.2e-24 117.1 239 36.4
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.9e-24 116.7 228 39.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.5e-24 115.5 76 72.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.1e-23 114.8 282 34.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.9e-23 114.0 140 49.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.5e-23 113.6 203 41.4
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 5.1e-21 105.9 73 69.9
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.3e-20 102.8 145 43.4
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-19 98.6 108 40.7
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.5e-12 77.8 95 45.3
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 5.7e-12 75.9 49 75.5
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.4e-10 71.2 140 35.7
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-08 64.7 42 71.4
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.4e-07 61.2 52 57.7
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 9.4e-07 58.5 50 60.0
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-06 57.8 55 54.5


User provided reference genes

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