Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.3e-104 381.7 194 100.0
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.1e-34 149.8 175 52.6
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.4e-32 142.5 211 47.4
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 4.9e-31 138.7 214 46.7
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.4e-30 137.1 175 49.7
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.4e-30 135.2 169 51.5
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 7.1e-30 134.8 194 47.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.5e-29 132.5 176 47.7
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.3e-28 130.6 188 50.5
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 2.3e-28 129.8 176 46.6
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.3e-28 129.8 198 47.0
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 3.0e-28 129.4 167 49.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 3.0e-28 129.4 199 45.2
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 3.9e-28 129.0 154 53.9
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.6e-28 127.9 179 47.5
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.1e-27 127.5 209 44.5
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.5e-27 127.1 194 43.8
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 3.3e-27 125.9 161 50.9
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 9.5e-27 124.4 210 44.3
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 9.5e-27 124.4 174 44.3
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.2e-26 124.0 141 49.6
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.8e-26 122.9 205 42.9
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.8e-26 122.9 202 42.1
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-26 122.5 198 43.4
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-26 122.5 177 46.9
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.6e-26 122.5 177 46.9
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 4.7e-26 122.1 162 48.8
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 4.7e-26 122.1 181 48.1
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 6.2e-26 121.7 193 43.5
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 8.1e-26 121.3 216 42.6
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 1.1e-25 120.9 202 43.6
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.4e-25 120.6 171 50.9
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.1e-25 119.4 165 46.1
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.0e-25 119.0 168 45.2
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 5.2e-25 118.6 213 45.1
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.5e-24 117.1 205 42.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 2.6e-24 116.3 177 46.9
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.4e-24 115.5 206 39.8
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 5.8e-24 115.2 169 47.9
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 5.8e-24 115.2 175 45.1
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 7.6e-24 114.8 190 43.2
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 9.9e-24 114.4 161 45.3
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 9.9e-24 114.4 174 46.0
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-23 113.2 127 44.1
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.9e-23 112.1 205 42.0
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 8.4e-23 111.3 138 44.2
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.9e-22 110.2 200 44.5
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.1e-22 109.0 215 43.7
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 7.1e-22 108.2 160 46.2
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-21 107.5 212 39.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.2e-21 107.5 137 46.0
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-21 107.5 177 39.5
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.2e-21 107.5 213 39.0
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.2e-21 107.5 184 42.4
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 2.1e-21 106.7 162 48.8
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 4.6e-21 105.5 184 40.8
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 6.0e-21 105.1 177 40.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.3e-20 104.0 159 39.6
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 2.3e-20 103.2 201 46.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.0e-20 102.8 159 44.7
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 5.1e-20 102.1 153 46.4
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 6.6e-20 101.7 168 42.9
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 6.6e-20 101.7 171 44.4
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 8.6e-20 101.3 176 42.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.1e-19 100.9 186 38.2
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.5e-19 100.5 174 35.1
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.9e-19 100.1 142 43.0
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 5.6e-19 98.6 180 37.8
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 7.3e-19 98.2 169 38.5
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 9.6e-19 97.8 150 40.7
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-18 97.1 186 43.0
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.6e-18 97.1 170 43.5
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 2.1e-18 96.7 164 40.9
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 2.1e-18 96.7 175 39.4
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.6e-18 95.9 160 42.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.6e-18 95.9 211 37.4
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.2e-18 95.1 141 48.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 6.2e-18 95.1 193 42.0
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 6.2e-18 95.1 175 44.0
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 6.2e-18 95.1 176 40.9
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.1e-18 94.7 178 37.6
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 8.1e-18 94.7 167 44.9
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.4e-17 94.0 152 38.8
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-17 93.6 166 39.8
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.8e-17 93.6 150 42.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-17 93.2 172 39.0
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 3.1e-17 92.8 184 39.1
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 4.0e-17 92.4 216 35.6
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 6.9e-17 91.7 176 42.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 6.9e-17 91.7 176 42.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 2.0e-16 90.1 159 40.9
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.6e-16 89.7 160 40.6
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 5.8e-16 88.6 171 42.1
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 5.8e-16 88.6 215 33.5
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.9e-16 87.8 184 37.5
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.7e-15 87.0 168 38.7
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-15 87.0 175 40.6
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-15 87.0 175 40.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.7e-15 87.0 165 41.8
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.7e-15 87.0 207 37.2
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-15 86.7 177 36.2
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.9e-15 86.3 193 38.3
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.8e-15 85.9 197 38.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.9e-15 85.5 174 40.2
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.9e-15 85.5 179 38.5
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.4e-15 85.1 188 39.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.1e-14 84.3 174 39.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.9e-14 83.6 179 36.3
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.4e-14 83.2 190 38.4
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 3.2e-14 82.8 176 38.1
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 4.2e-14 82.4 136 41.2
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 9.3e-14 81.3 168 32.7
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.2e-13 80.9 174 37.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-13 80.9 149 42.3
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.1e-13 80.1 190 38.4
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.1e-13 80.1 163 35.6
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.7e-13 79.7 183 39.9
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.6e-13 79.0 176 39.8
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.6e-13 79.0 176 39.8
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.7e-12 77.0 189 37.6
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-12 77.0 166 36.7
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-12 77.0 166 36.7
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.7e-12 77.0 183 38.3
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-12 77.0 166 36.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.3e-12 76.6 186 36.6
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 3.0e-12 76.3 190 37.9
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.0e-12 76.3 186 36.0
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 8.7e-12 74.7 182 39.0
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.1e-11 74.3 211 35.1
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.9e-11 73.6 188 37.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.5e-11 73.2 165 38.8
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.6e-11 71.2 165 38.2
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 9.6e-11 71.2 179 33.5
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.6e-10 70.5 195 38.5
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.1e-10 70.1 186 34.9
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.6e-10 69.3 111 41.4
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.1e-10 68.2 128 42.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.8e-09 67.0 149 38.9
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 4.0e-09 65.9 115 43.5
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.2e-08 64.3 183 33.9
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.5e-08 62.4 188 33.5
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 6.4e-07 58.5 123 41.5
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 2.4e-06 56.6 164 33.5
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 4.2e-06 55.8 85 42.4
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.4e-06 55.5 164 33.5
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 7.1e-06 55.1 52 51.9


User provided reference genes

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