Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 5.4e-47 190.7 97 100.0
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.3e-37 158.7 97 79.4
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 3.0e-37 158.3 97 81.4
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 5.1e-37 157.5 97 79.4
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.1e-37 157.5 97 79.4
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 6.6e-37 157.1 100 78.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.5e-36 156.0 97 82.5
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.5e-36 155.2 97 77.3
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-36 154.8 97 77.3
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.3e-36 154.8 97 77.3
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 5.6e-36 154.1 97 80.4
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 2.1e-35 152.1 100 76.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 2.1e-35 152.1 101 79.2
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 2.1e-35 152.1 100 76.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.8e-35 151.8 100 76.0
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.6e-35 151.4 97 76.3
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 1.4e-34 149.4 97 78.4
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.8e-34 149.1 97 76.3
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 2.4e-34 148.7 98 77.6
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 2.4e-34 148.7 97 78.4
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 4.0e-34 147.9 100 75.0
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 6.9e-34 147.1 98 75.5
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 6.9e-34 147.1 98 75.5
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 6.9e-34 147.1 98 75.5
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 6.9e-34 147.1 98 79.6
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 9.0e-34 146.7 98 77.6
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 9.0e-34 146.7 98 75.5
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.2e-33 146.4 100 72.0
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 1.2e-33 146.4 98 73.5
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 73.5
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 73.5
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.5e-33 146.0 97 75.3
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 73.5
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 73.5
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 73.5
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 74.5
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 76.5
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 76.5
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.6e-33 145.2 97 74.2
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 75.5
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 78.6
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 4.5e-33 144.4 98 74.5
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 4.5e-33 144.4 98 76.5
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 5.8e-33 144.1 98 72.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 9.9e-33 143.3 99 71.7
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 75.3
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 71.4
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 74.5
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 69.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 71.4
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 72.4
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.2e-32 142.1 101 77.2
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.2e-32 142.1 101 77.2
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 71.4
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 73.5
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.9e-32 141.7 101 78.2
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.9e-32 141.7 98 71.4
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 2.9e-32 141.7 99 72.7
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 2.9e-32 141.7 97 70.1
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.9e-32 141.7 98 72.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.9e-32 141.7 98 73.5
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 70.7
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 3.8e-32 141.4 100 74.0
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 4.9e-32 141.0 99 70.7
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 6.4e-32 140.6 97 72.2
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 8.4e-32 140.2 99 73.7
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 8.4e-32 140.2 101 74.3
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 8.4e-32 140.2 101 74.3
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 8.4e-32 140.2 98 73.5
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-31 139.8 98 68.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 1.4e-31 139.4 103 76.7
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 73.5
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.9e-31 139.0 98 75.5
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.9e-31 139.0 101 69.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.4e-31 138.7 98 69.4
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 3.2e-31 138.3 102 68.6
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 3.2e-31 138.3 99 69.7
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 3.2e-31 138.3 101 73.3
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 4.2e-31 137.9 97 69.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.2e-31 137.9 73 87.7
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 5.4e-31 137.5 95 69.5
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.4e-31 137.5 73 87.7
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.4e-31 137.5 73 87.7
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.4e-31 137.5 73 87.7
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 5.4e-31 137.5 99 76.8
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 5.4e-31 137.5 100 74.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.2e-30 136.3 97 68.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.2e-30 136.3 100 72.0
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 1.2e-30 136.3 97 68.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 1.2e-30 136.3 99 68.7
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.6e-30 136.0 99 68.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 70.7
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 70.7
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 71.7
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 71.7
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 7.9e-30 133.7 104 68.3
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 97 69.1
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 2.3e-29 132.1 97 68.0
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 3.0e-29 131.7 99 68.7
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 71.4
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 3.0e-29 131.7 99 70.7
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 3.9e-29 131.3 98 71.4
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 3.9e-29 131.3 97 69.1
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 5.1e-29 131.0 99 67.7
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 5.1e-29 131.0 99 67.7
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 8.7e-29 130.2 97 72.2
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.1e-28 129.8 121 58.7
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.5e-28 129.4 99 66.7
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.9e-28 129.0 107 60.7
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 1.9e-28 129.0 100 67.0
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 2.5e-28 128.6 97 62.9
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.5e-28 128.6 89 70.8
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 3.3e-28 128.3 95 66.3
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 3.3e-28 128.3 89 69.7
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 5.6e-28 127.5 98 64.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 7.4e-28 127.1 99 65.7
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.1e-27 125.6 99 64.6
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.8e-27 125.2 101 71.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 2.8e-27 125.2 99 71.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.8e-27 124.4 92 69.6
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 6.2e-27 124.0 99 61.6
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 6.2e-27 124.0 103 65.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 6.2e-27 124.0 98 63.3
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 8.1e-27 123.6 97 63.9
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.1e-26 123.2 90 70.0
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 1.4e-26 122.9 102 65.7
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.4e-26 122.1 125 59.2
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.4e-26 122.1 98 62.2
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.1e-26 121.7 74 77.0
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 4.0e-26 121.3 84 71.4
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 9.0e-26 120.2 95 65.3
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.6e-25 118.6 96 61.5
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 7.6e-25 117.1 97 60.8
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.8e-24 114.8 74 75.7
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 2.4e-23 112.1 156 45.5
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 3.5e-22 108.2 98 59.2
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 7.9e-22 107.1 108 54.6
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.0e-21 106.7 96 55.2
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.8e-21 105.9 98 57.1
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 8.7e-21 103.6 98 56.1
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.9e-20 102.4 63 79.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 2.5e-20 102.1 59 78.0
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 3.3e-20 101.7 74 67.6
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.6e-19 99.4 95 50.5
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 6.9e-18 94.0 83 61.4
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.1e-15 86.7 61 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 4.1e-10 68.2 92 41.3
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.0e-08 63.5 66 50.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.0e-08 63.5 95 38.9
Psat2g095760 Pisum sativum HOM05D000552 ORTHO05D005523 5.5e-07 57.8 53 60.4


User provided reference genes

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