Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-249 865.1 437 100.0
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 4.9e-180 634.8 337 96.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 9.2e-179 630.6 351 91.7
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 7.1e-171 604.4 388 78.6
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 2.1e-162 576.2 382 74.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 7.8e-162 574.3 380 75.3
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 6.2e-159 564.7 379 73.6
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 2.4e-158 562.8 378 73.3
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 5.3e-158 561.6 379 73.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.5e-157 558.5 382 73.0
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 4.2e-155 552.0 379 72.3
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 4.6e-154 548.5 386 71.0
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 7.9e-154 547.7 373 73.2
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.0e-153 547.4 379 71.8
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.8e-153 546.6 382 71.2
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.0e-153 545.8 373 72.9
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 3.0e-153 545.8 378 72.0
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 3.9e-153 545.4 380 71.3
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.9e-153 545.4 379 71.2
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.5e-152 543.5 380 72.1
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.5e-152 543.5 375 71.7
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 3.3e-152 542.3 393 70.5
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.3e-152 542.3 377 71.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 4.3e-152 542.0 373 72.7
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 4.3e-152 542.0 375 72.3
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 5.6e-152 541.6 380 70.8
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.1e-151 539.7 400 69.5
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.8e-151 539.3 380 71.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.7e-151 538.9 380 71.6
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.1e-151 537.7 380 71.1
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.8e-150 536.6 375 70.7
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 1.2e-149 533.9 378 69.8
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.4e-149 532.3 375 70.7
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 4.5e-149 531.9 397 67.8
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 4.5e-149 531.9 368 72.6
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 7.6e-149 531.2 380 70.5
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.7e-148 530.0 393 68.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.2e-148 529.6 373 69.4
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 2.2e-148 529.6 373 70.5
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 2.9e-148 529.3 374 70.1
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 4.9e-148 528.5 374 70.9
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 4.2e-147 525.4 373 69.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 5.5e-147 525.0 373 69.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 7.1e-147 524.6 373 69.7
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 9.3e-147 524.2 375 70.1
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.2e-146 523.9 375 68.8
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 4.6e-146 521.9 373 69.7
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.3e-145 520.4 373 69.4
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 1.8e-145 520.0 373 68.6
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 3.0e-145 519.2 373 68.1
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 6.7e-145 518.1 373 68.6
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.1e-144 517.3 386 66.8
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.1e-144 517.3 371 69.5
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.5e-144 516.9 376 68.6
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.9e-144 516.5 373 69.2
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.5e-144 516.2 373 69.4
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 3.3e-144 515.8 373 69.2
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.3e-144 515.8 378 69.0
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 9.6e-144 514.2 373 67.6
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.6e-143 513.5 355 73.2
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.1e-142 510.8 375 67.2
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 3.1e-142 509.2 373 67.0
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 5.3e-142 508.4 380 68.4
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 5.3e-142 508.4 370 69.7
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 9.0e-142 507.7 372 67.5
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.6e-141 506.1 351 72.1
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 3.4e-141 505.8 357 71.1
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 7.1e-139 498.0 378 66.9
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 7.1e-139 498.0 355 69.3
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.1e-138 496.5 378 65.3
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 7.9e-138 494.6 379 64.6
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.0e-137 494.2 374 65.8
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 6.7e-137 491.5 374 65.0
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.9e-136 490.0 376 65.2
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 3.3e-136 489.2 379 64.1
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 3.3e-136 489.2 336 73.8
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.3e-136 489.2 445 59.8
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.3e-136 489.2 445 59.8
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 4.3e-136 488.8 376 64.1
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 4.3e-136 488.8 376 63.3
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-135 487.3 374 64.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.2e-135 486.5 379 63.9
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 3.7e-135 485.7 374 64.2
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 6.3e-135 485.0 374 64.4
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-134 484.2 382 64.9
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 5.3e-134 481.9 381 61.7
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.2e-133 480.7 375 62.7
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-133 479.2 426 61.5
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 2.5e-131 473.0 372 64.5
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.2e-131 472.2 354 66.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.6e-130 470.3 373 62.5
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.0e-129 467.6 371 61.5
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.1e-128 464.2 379 63.6
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 9.7e-128 461.1 375 60.0
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 6.3e-127 458.4 303 74.6
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-124 450.7 371 60.4
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.1e-122 443.4 371 60.1
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 6.7e-121 438.3 371 59.3
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.6e-120 436.4 372 58.3
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.6e-120 436.4 371 58.0
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.1e-118 429.1 341 64.2
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 4.5e-117 425.6 371 56.6
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.0e-113 414.5 372 56.2
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.4e-113 414.1 371 55.5
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-113 413.3 357 61.9
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 3.3e-112 409.5 368 55.7
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.4e-110 404.1 382 52.9
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.1e-107 394.4 359 58.2
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.1e-106 390.2 363 55.6
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.1e-106 390.2 362 54.4
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-105 387.9 273 70.3
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.7e-100 370.5 373 54.2
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.7e-100 370.5 352 53.4
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.2e-100 370.2 269 69.5
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.1e-99 367.9 354 54.5
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 1.9e-99 367.1 225 80.9
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 3.6e-98 362.8 257 70.4
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.0e-88 330.5 368 49.7
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.4e-86 324.3 354 50.0
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 7.3e-83 312.0 227 66.1
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.4e-78 297.0 296 56.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.0e-72 277.3 205 71.2
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 2.6e-64 250.4 187 66.8
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 6.6e-52 209.1 311 38.9
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-47 194.1 156 61.5
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 2.9e-47 193.7 111 87.4
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.1e-38 165.2 193 47.7
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.4e-38 164.9 156 55.8
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 3.2e-38 163.7 141 59.6
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 6.0e-37 159.5 117 66.7
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 1.1e-35 155.2 117 67.5
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-35 154.8 112 67.0
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.9e-35 154.5 148 48.6
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 3.7e-34 150.2 110 69.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.4e-33 148.3 157 52.9
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 4.9e-31 139.8 136 48.5
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 1.4e-30 138.3 110 59.1
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 4.6e-29 133.3 124 53.2
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 8.7e-28 129.0 124 52.4
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 8.2e-26 122.5 97 64.9
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 1.4e-25 121.7 100 58.0
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.2e-22 110.5 91 63.7
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.0e-20 105.5 84 63.1
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.0e-20 105.5 79 65.8
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.8e-20 104.8 312 27.6
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 4.3e-19 100.1 329 25.8
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.4e-19 99.4 73 69.9
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 9.7e-19 99.0 75 64.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 9.7e-19 99.0 75 64.0
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 2.4e-17 94.4 73 65.8
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 2.2e-15 87.8 91 54.9
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.4e-14 85.1 66 63.6
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.2e-14 84.0 63 69.8
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 9.4e-14 82.4 74 55.4
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.6e-13 81.6 120 38.3
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 2.1e-13 81.3 62 64.5
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 2.1e-13 81.3 62 64.5
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 2.1e-13 81.3 62 64.5
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 2.1e-13 81.3 62 64.5
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 3.0e-12 77.4 64 62.5
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-11 75.5 62 61.3
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 9.7e-11 72.4 141 32.6
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 4.8e-10 70.1 58 60.3
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 1.1e-09 68.9 112 42.0
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.4e-09 68.6 76 46.1
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-08 65.5 57 56.1
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.2e-08 65.5 71 47.9
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 3.4e-08 63.9 313 27.5
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 2.5e-06 57.8 52 57.7
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 3.2e-06 57.4 261 26.1


User provided reference genes

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