Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 5.5e-90 334.3 175 100.0
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 2.3e-40 169.5 177 53.1
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 1.1e-37 160.6 177 49.7
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 3.5e-36 155.6 176 48.3
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 4.6e-36 155.2 181 50.8
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 3.9e-35 152.1 186 46.8
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 5.0e-35 151.8 173 48.6
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 5.0e-35 151.8 181 47.5
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 6.6e-35 151.4 184 45.1
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 1.5e-34 150.2 177 49.2
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.5e-34 150.2 179 48.6
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.3e-34 149.1 176 50.6
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 5.6e-34 148.3 187 46.5
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 5.6e-34 148.3 183 47.0
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 5.6e-34 148.3 176 48.9
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 9.5e-34 147.5 169 49.7
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 2.1e-33 146.4 184 46.2
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.7e-33 145.2 182 47.3
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.7e-33 145.2 178 47.8
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 8.0e-33 144.4 179 49.7
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.0e-32 144.1 179 47.5
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.0e-32 144.1 172 48.3
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 1.8e-32 143.3 180 43.9
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.2e-32 141.7 180 47.8
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 6.8e-32 141.4 179 48.6
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 8.9e-32 141.0 183 43.2
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 8.9e-32 141.0 172 45.9
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 4.4e-31 138.7 183 45.9
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 4.4e-31 138.7 172 43.6
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 7.5e-31 137.9 172 43.6
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 1.3e-30 137.1 172 48.3
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 1.7e-30 136.7 174 50.0
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 2.2e-30 136.3 182 44.5
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 3.7e-30 135.6 180 45.6
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 4.9e-30 135.2 181 42.0
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 4.9e-30 135.2 169 46.2
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 8.3e-30 134.4 183 44.8
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 8.3e-30 134.4 177 46.3
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 1.4e-29 133.7 187 42.2
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 1.9e-29 133.3 172 45.9
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 2.4e-29 132.9 170 46.5
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 5.4e-29 131.7 178 43.3
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 7.0e-29 131.3 178 43.8
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 7.0e-29 131.3 189 41.3
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 9.2e-29 131.0 169 46.2
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 9.2e-29 131.0 193 44.6
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 9.2e-29 131.0 178 45.5
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.6e-28 130.2 182 45.6
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 4.6e-28 128.6 176 44.9
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 7.8e-28 127.9 186 46.8
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 7.8e-28 127.9 178 47.8
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 7.8e-28 127.9 182 40.1
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 1.0e-27 127.5 192 39.6
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.3e-27 127.1 174 43.1
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 1.7e-27 126.7 174 43.7
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.7e-27 126.7 186 45.7
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 2.3e-27 126.3 175 45.1
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 2.3e-27 126.3 176 40.9
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 2.3e-27 126.3 175 45.1
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 2.3e-27 126.3 176 40.9
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 3.0e-27 125.9 176 43.2
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 3.0e-27 125.9 186 40.3
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 6.6e-27 124.8 186 42.5
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 1.5e-26 123.6 179 43.6
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 2.5e-26 122.9 185 43.2
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 3.3e-26 122.5 181 47.5
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 3.3e-26 122.5 173 41.6
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.3e-26 122.5 176 43.8
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 4.3e-26 122.1 176 42.6
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 4.3e-26 122.1 180 45.6
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 5.6e-26 121.7 171 44.4
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 5.6e-26 121.7 170 45.9
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 7.3e-26 121.3 187 41.2
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 7.3e-26 121.3 183 39.9
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 7.3e-26 121.3 181 41.4
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.2e-25 120.6 179 39.1
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 2.1e-25 119.8 179 41.9
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 4.7e-25 118.6 183 40.4
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 6.2e-25 118.2 192 37.5
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 6.2e-25 118.2 179 41.3
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 8.1e-25 117.9 169 45.6
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 8.1e-25 117.9 170 38.8
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 1.1e-24 117.5 177 41.8
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 1.4e-24 117.1 179 38.5
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.4e-24 117.1 174 43.7
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.8e-24 116.7 186 39.2
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 2.3e-24 116.3 179 38.0
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 3.1e-24 115.9 178 43.8
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 3.1e-24 115.9 162 42.0
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 4.0e-24 115.5 171 42.7
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 5.2e-24 115.2 173 38.7
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 6.8e-24 114.8 184 44.0
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.4e-23 112.5 181 40.9
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 3.4e-23 112.5 214 41.6
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 4.4e-23 112.1 176 40.9
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.4e-23 112.1 181 40.9
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.4e-23 112.1 182 39.0
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 4.4e-23 112.1 179 41.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 4.4e-23 112.1 176 42.0
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 1.3e-22 110.5 182 38.5
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.7e-22 110.2 182 38.5
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.7e-22 110.2 177 40.1
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 1.7e-22 110.2 179 38.5
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 3.7e-22 109.0 180 41.7
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 2.4e-21 106.3 207 39.1
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.6e-20 103.6 184 36.4
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 2.1e-20 103.2 172 40.1
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 6.0e-20 101.7 134 41.8
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 3.0e-19 99.4 167 37.1
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 3.9e-19 99.0 171 40.4
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 8.6e-19 97.8 178 37.6
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.9e-18 96.7 212 34.9
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 2.5e-18 96.3 166 33.1
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 7.3e-18 94.7 175 37.7
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 3.6e-17 92.4 187 33.7
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.4e-16 90.5 129 38.8
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.1e-16 89.4 163 37.4
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 4.0e-16 89.0 162 27.8
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 5.2e-16 88.6 166 39.2
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 8.9e-16 87.8 182 31.9
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 3.7e-14 82.4 146 34.9
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 8.4e-14 81.3 120 44.2
DCAR_022257 Daucus carota HOM05D001346 ORTHO05D006426 7.1e-13 78.2 50 74.0
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 7.8e-12 74.7 167 30.5
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 6.6e-11 71.6 82 58.5
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 2.5e-10 69.7 177 33.9
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 4.3e-10 68.9 73 47.9
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 9.6e-10 67.8 83 54.2
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 1.6e-09 67.0 127 40.2
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 1.2e-07 60.8 55 58.2
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.5e-07 60.5 52 51.9
Mapoly0108s0043 Marchantia polymorpha HOM05D005478 ORTHO05D006426 2.0e-07 60.1 187 29.9
Actinidia35779 Actinidia chinensis HOM05D005478 ORTHO05D006426 9.9e-07 57.8 140 34.3
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 2.9e-06 56.2 47 53.2
Zm00001eb246060 Zea mays HOM05D044595 ORTHO05D006426 4.9e-06 55.5 195 26.7
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 6.4e-06 55.1 131 29.0
MBI10_g11211_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 6.4e-06 55.1 168 28.6


User provided reference genes

Program Settings