Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1500.3 789 100.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1225.3 799 80.1
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 818 76.9
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1171.8 811 76.6
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1167.9 810 75.3
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 804 75.0
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 810 75.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 803 74.7
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 802 74.7
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 849 71.6
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1138.3 793 75.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 801 75.2
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1132.1 818 72.4
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 798 74.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 813 72.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 806 73.7
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 799 75.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 804 74.4
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 785 76.4
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 803 73.7
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1122.8 793 74.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1122.1 795 74.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1120.5 810 73.8
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1117.4 809 72.7
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1117.1 807 73.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1115.9 794 74.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1115.9 801 73.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 808 71.3
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 788 73.7
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1112.1 804 73.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 797 73.8
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1109.7 790 74.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 789 74.5
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 789 74.5
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 803 73.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 800 73.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 799 74.6
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1105.1 791 73.5
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1104.4 791 72.4
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1104.0 799 74.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1102.0 872 69.3
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 803 73.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 801 73.2
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 792 72.6
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 808 71.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 806 71.7
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 832 71.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 760 75.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 788 72.5
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1089.3 787 72.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 812 73.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1086.2 800 71.1
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 807 71.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 795 72.5
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 793 72.8
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1083.2 803 72.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 780 71.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 799 71.2
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 791 72.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 802 70.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 799 71.1
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 800 71.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.4e-312 1073.5 792 71.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.2e-311 1072.0 785 71.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.4e-310 1068.5 796 69.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.1e-310 1068.1 800 69.8
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.1e-310 1068.1 798 69.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.0e-309 1065.4 788 71.4
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.7e-309 1063.5 811 70.7
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 848 67.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.8e-308 1061.2 676 80.6
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.0e-308 1060.8 787 71.4
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.5e-308 1060.4 813 69.2
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 811 69.4
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 9.4e-307 1056.6 800 69.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 786 70.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 4.7e-306 1054.3 793 70.9
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.7e-306 1054.3 783 70.9
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.7e-306 1054.3 783 70.9
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 6.1e-306 1053.9 783 70.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 4.0e-305 1051.2 810 69.8
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 782 70.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 5.2e-305 1050.8 782 70.8
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-304 1046.6 784 70.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.8e-302 1042.3 766 73.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.1e-302 1041.6 798 68.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-301 1038.5 798 69.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.5e-300 1033.9 778 69.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 2.1e-298 1028.9 902 63.9
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 9.8e-296 1020.0 808 67.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 4.5e-293 1011.1 650 78.9
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.4e-289 999.6 795 67.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 8.8e-289 996.9 808 66.7
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.1e-286 988.4 650 77.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.8e-285 983.8 798 67.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.7e-284 982.6 650 76.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 8.0e-282 973.8 774 67.4
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.8e-281 972.6 777 66.7
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 8.9e-281 970.3 787 65.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.5e-280 969.5 835 64.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 7.5e-280 967.2 776 66.6
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.9e-275 952.6 774 66.4
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 2.0e-272 942.6 812 61.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 4.4e-272 941.4 777 64.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.5e-267 926.4 785 65.7
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 6.4e-263 911.0 776 64.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.5e-261 905.2 792 62.9
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 9.5e-259 897.1 821 60.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.5e-256 889.8 718 69.5
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.4e-256 888.3 815 59.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.2e-247 859.4 795 57.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-227 792.3 641 66.5
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 9.0e-225 784.3 664 64.5
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.1e-209 732.3 802 52.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.0e-203 713.4 484 77.9
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 7.4e-195 684.9 854 48.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 7.4e-195 684.9 854 48.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 5.7e-187 658.7 875 46.2
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.4e-179 632.9 621 57.6
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.8e-178 629.0 843 45.6
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-167 594.3 657 51.6
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.7e-162 577.4 463 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 8.3e-162 575.1 831 42.7
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.5e-160 569.7 535 61.1
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.3e-159 567.8 580 55.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 9.8e-155 551.6 438 65.5
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.0e-127 461.8 402 62.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 8.4e-106 389.0 620 43.4
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-104 384.0 599 43.7
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.0e-87 327.4 216 79.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.2e-77 294.7 305 55.7
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-76 291.6 207 72.9
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.2e-75 288.9 771 30.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-73 282.3 197 73.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-73 281.6 197 73.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-73 281.6 197 73.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.7e-69 267.3 209 66.0
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.5e-65 254.6 237 59.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-62 244.2 467 39.4
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.2e-54 219.2 564 35.1
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.3e-49 201.1 121 75.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.1e-48 198.4 131 77.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-42 179.5 792 27.0
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-39 168.7 202 52.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 6.8e-39 166.8 87 83.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 6.8e-39 166.8 87 83.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.4e-36 159.1 92 78.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.6e-34 149.8 364 32.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-31 142.5 130 60.8
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.2e-28 129.8 141 51.1
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 8.1e-24 116.7 89 61.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-22 112.8 75 81.3
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 6.4e-21 107.1 71 69.0
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 4.6e-19 100.9 74 62.2
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-18 99.0 120 51.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.0e-18 98.2 111 50.5
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-17 95.1 107 45.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.6e-16 91.3 99 50.5
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.8e-15 89.0 53 81.1
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 9.0e-15 86.7 59 66.1
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.0e-14 85.5 107 53.3
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.6e-11 75.9 69 59.4
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 6.0e-11 73.9 52 78.8
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 1.1e-09 69.7 77 50.6
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 52 75.0
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.5e-09 68.6 77 50.6
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 5.6e-09 67.4 51 72.5
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 7.3e-09 67.0 74 51.4
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 9.6e-09 66.6 63 61.9
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.3e-07 60.8 246 26.8


User provided reference genes

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