Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010994 Daucus carota HOM05D001962 ORTHO05D177393 1.2e-39 166.0 81 100.0
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.0e-06 56.6 65 50.8
DCAR_014880 Daucus carota HOM05D000001 ORTHO05D009097 1.3e-06 56.2 26 100.0
HPP92_027836 Vanilla planifolia HOM05D001962 ORTHO05D002236 1.7e-06 55.8 28 89.3
Rhsim03G0247700 Rhododendron simsii HOM05D001962 ORTHO05D002236 3.0e-06 55.1 39 71.8
Haze_25598 Corylus avellana HOM05D001962 ORTHO05D002236 3.9e-06 54.7 29 89.7
Aa31LG10G2410 Aethionema arabicum HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Aa31LG5G20770 Aethionema arabicum HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
MSTRG.4250 Avicennia marina HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
CDE04G0783 Ceratophyllum demersum HOM05D001962 ORTHO05D002236 5.1e-06 54.3 43 65.1
Eucgr.F02110 Eucalyptus grandis HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Eucgr.F02535 Eucalyptus grandis HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Gohir.A10G075200 Gossypium hirsutum HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Gohir.D10G076300 Gossypium hirsutum HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Gorai.011G082100 Gossypium raimondii HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Lj2A547G20 Lonicera japonica HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Medtr2g103570 Medicago truncatula HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
THA.LOC104815534 Tarenaya hassleriana HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
TAR626G0074 Trochodendron aralioides HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
unitig_37.g12351 Utricularia gibba HOM05D001962 ORTHO05D002236 5.1e-06 54.3 38 73.7
Actinidia26395 Actinidia chinensis HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
AL1G60880 Arabidopsis lyrata HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
AT1G52600 Arabidopsis thaliana HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
arahy.Tifrunner.gnm1.ann1.AP5PRQ Arachis hypogaea HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
arahy.Tifrunner.gnm1.ann1.LPE59Q Arachis hypogaea HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
MSTRG.9791 Avicennia marina HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
EL10Ac9g21917 Beta vulgaris HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BcaC08g43435 Brassica carinata HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BcaC08g44006 Brassica carinata HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
A05p18870 Brassica napus HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
C06p08030 Brassica napus HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
C06p14170 Brassica napus HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BolC6t35886H Brassica oleracea HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BolC6t36595H Brassica oleracea HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BraA05t20784Z Brassica rapa HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BraA06t23392Z Brassica rapa HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CSS0027887 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CSS0037743 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CSS0050327 Camellia sinensis var. sinensis HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Carub.0001s4160 Capsella rubella HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CAN.G594.19 Capsicum annuum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CARHR042730 Cardamine hirsuta HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CiPaw.01G245900 Carya illinoinensis HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
ClCG07G012720 Citrullus lanatus HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Ciclev10026591m.g Citrus clementina HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
COL.COLO4_12926 Corchorus olitorius HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
MELO3C017891.2 Cucumis melo HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
CsaV3_4G001480 Cucumis sativus L. HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Dinv36533 Davidia involucrata HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Dinv41517 Davidia involucrata HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Duzib235G1117 Durio zibethinus HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Thhalv10011816m.g Eutrema salsugineum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Glyma.06G310200 Glycine max HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Glyma.17G055700 Glycine max HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Gohir.A05G125600 Gossypium hirsutum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Gohir.D05G126600 Gossypium hirsutum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Gorai.009G130600 Gossypium raimondii HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Hma1.2p1_0018F.1_g012500 Hydrangea macrophylla HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Hma1.2p1_0665F.1_g199010 Hydrangea macrophylla HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Manes.04G115100 Manihot esculenta HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Manes.11G054400 Manihot esculenta HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Nn8g39437 Nelumbo nucifera HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Nitab4.5_0005139g0040 Nicotiana tabacum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
PSO541G5707 Papaver somniferum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
PSO675G4709 Papaver somniferum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Peaxi162Scf00148g00157 Petunia axillaris HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Peaxi162Scf00984g00024 Petunia axillaris HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Phvul.005G176700 Phaseolus vulgaris HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Psat5g301720 Pisum sativum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Potri.003G062800 Populus trichocarpa HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
PGR102G2280 Punica granatum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
SalBow8G3707 Salvia bowleyana HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Sp1g39160 Schrenkiella parvula HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Sed0025379 Sechium edule HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Solyc12g006540.2 Solanum lycopersicum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Sopen12g002490 Solanum pennellii HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
PGSC0003DMG401018963 Solanum tuberosum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
PGSC0003DMG402018963 Solanum tuberosum HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
SGA_v2.0_scaffold102G29909 Striga asiatica HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
Thecc.03G000300 Theobroma cacao HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
VMungo1080G1169 Vigna mungo HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
GSVIVG01017299001 Vitis vinifera HOM05D001962 ORTHO05D002236 6.6e-06 53.9 38 71.1
BcaC01g01331 Brassica carinata HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 89.3
A08p02120 Brassica napus HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 89.3
C03p90700 Brassica napus HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 89.3
BolC3t21391H Brassica oleracea HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 89.3
BraA08t32259Z Brassica rapa HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 89.3
RcHm_v2.0_Chr2g0088691 Rosa chinensis HOM05D001962 ORTHO05D002236 8.6e-06 53.5 28 85.7


User provided reference genes

Program Settings