Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 3.7e-32 141.0 73 100.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 3.7e-32 141.0 73 100.0
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.5e-20 100.5 72 75.0
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 9.5e-20 99.8 73 72.6
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.5e-17 92.4 73 74.0
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.5e-17 92.4 73 74.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-17 92.4 73 74.0
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.4e-17 91.3 73 71.2
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.5e-17 90.1 65 73.8
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 7.5e-17 90.1 73 69.9
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.8e-17 89.7 73 71.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.3e-16 89.4 73 69.9
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-16 88.2 73 69.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.8e-16 88.2 73 69.9
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.3e-16 87.0 73 68.5
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.3e-16 87.0 73 67.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.3e-16 87.0 65 73.8
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 6.3e-16 87.0 73 68.5
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 8.3e-16 86.7 72 69.4
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.3e-16 86.7 70 70.0
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.1e-15 86.3 65 72.3
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.1e-15 86.3 72 65.3
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 2.4e-15 85.1 74 63.5
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.4e-15 85.1 70 67.1
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 2.4e-15 85.1 74 63.5
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.2e-15 84.7 73 69.9
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 4.1e-15 84.3 70 65.7
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.1e-15 84.3 72 66.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 1.2e-14 82.8 74 63.5
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-14 82.4 65 70.8
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.0e-14 82.0 72 68.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.0e-14 82.0 70 64.3
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-14 82.0 73 67.1
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.7e-14 81.6 74 67.6
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.7e-14 81.6 70 68.6
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 4.6e-14 80.9 71 69.0
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 4.6e-14 80.9 70 62.9
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 2.9e-13 78.2 70 64.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.9e-13 77.8 62 69.4
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.9e-13 77.8 75 62.7
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.0e-13 77.4 75 62.7
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 8.6e-13 76.6 65 64.6
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.1e-12 76.3 70 62.9
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-12 76.3 74 64.9
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.1e-12 76.3 74 60.8
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.5e-12 75.1 75 61.3
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.3e-12 74.7 66 66.7
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.3e-12 74.7 66 66.7
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 3.3e-12 74.7 73 63.0
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 4.3e-12 74.3 75 60.0
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.3e-12 74.3 71 62.0
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.3e-12 74.3 71 62.0
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-11 72.8 70 61.4
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 6.1e-11 70.5 75 57.3
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.4e-10 69.3 65 66.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 1.4e-10 69.3 70 60.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.8e-10 68.9 71 59.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.8e-10 68.9 63 58.7
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.1e-10 68.2 64 62.5
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 5.2e-10 67.4 72 54.2
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 1.2e-09 66.2 64 59.4
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.5e-09 65.9 76 52.6
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.6e-09 65.1 70 58.6
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 9.8e-09 63.2 89 44.9
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 1.3e-08 62.8 85 45.9
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.7e-08 62.4 61 54.1
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.9e-08 61.6 82 43.9
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.7e-08 61.2 85 44.7
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 3.7e-08 61.2 83 43.4
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 3.7e-08 61.2 83 43.4
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 4.9e-08 60.8 84 42.9
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 4.9e-08 60.8 56 58.9
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 4.9e-08 60.8 42 71.4
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.4e-08 60.5 58 58.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.4e-08 60.5 58 58.6
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 8.3e-08 60.1 85 43.5
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-07 59.7 42 69.0
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-07 59.7 42 69.0
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.1e-07 59.7 58 56.9
Os08g0416800 Oryza sativa ssp. japonica HOM05D050044 ORTHO05D050035 2.4e-07 58.5 69 58.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 3.2e-07 58.2 67 52.2
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 4.1e-07 57.8 59 55.9
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 5.4e-07 57.4 57 59.6
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 5.4e-07 57.4 64 54.7
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 7.0e-07 57.0 58 56.9
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 7.0e-07 57.0 59 55.9
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.0e-07 57.0 56 57.1
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 7.0e-07 57.0 56 57.1
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.2e-06 56.2 66 51.5
Cpa.g.sc1.252 Carica papaya HOM05D001568 ORTHO05D004404 1.2e-06 56.2 69 47.8
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-06 55.8 57 57.9
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.6e-06 55.8 57 57.9
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 2.0e-06 55.5 42 64.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.0e-06 55.5 57 57.9
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 2.7e-06 55.1 85 40.0
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.7e-06 55.1 56 55.4
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-06 55.1 56 53.6
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.7e-06 55.1 58 53.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.7e-06 55.1 57 57.9
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 2.7e-06 55.1 59 57.6
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 3.5e-06 54.7 64 45.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 3.5e-06 54.7 56 55.4
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.5e-06 54.7 57 56.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 3.5e-06 54.7 57 57.9
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 4.6e-06 54.3 56 57.1
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 4.6e-06 54.3 59 54.2
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.6e-06 54.3 59 54.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.6e-06 54.3 57 56.1
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.6e-06 54.3 57 56.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 4.6e-06 54.3 59 50.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.6e-06 54.3 57 56.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.6e-06 54.3 57 56.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.0e-06 53.9 56 55.4
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 7.8e-06 53.5 57 56.1
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.8e-06 53.5 54 57.4
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.8e-06 53.5 58 55.2
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 7.8e-06 53.5 57 54.4


User provided reference genes

Program Settings