Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 9.2e-125 450.3 236 100.0
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.9e-80 301.2 343 50.7
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.0e-78 297.4 335 51.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.9e-78 295.8 336 49.1
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 5.0e-78 295.0 344 50.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.9e-77 293.1 338 51.8
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 9.4e-77 290.8 341 49.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.2e-76 290.4 338 50.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.6e-76 290.0 338 49.7
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.7e-76 289.3 338 48.2
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 6.1e-76 288.1 338 48.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 6.1e-76 288.1 334 48.8
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-76 288.1 334 50.6
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.0e-75 287.3 332 49.7
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.4e-75 287.0 332 47.9
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.9e-75 285.4 332 47.0
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.8e-75 284.3 338 50.3
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 8.8e-75 284.3 332 48.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.5e-74 283.5 340 46.2
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.0e-74 283.1 336 47.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.3e-74 282.3 337 47.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.7e-73 280.0 340 48.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.7e-73 280.0 341 48.4
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.7e-73 280.0 332 48.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.7e-73 280.0 353 46.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 3.7e-73 278.9 332 46.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.8e-73 278.5 342 48.2
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 6.3e-73 278.1 336 48.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-72 277.3 337 45.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.1e-72 277.3 326 48.2
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.1e-72 277.3 342 46.8
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 4.1e-72 275.4 339 46.6
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 4.1e-72 275.4 340 46.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 6.9e-72 274.6 340 49.7
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 9.1e-72 274.2 338 48.2
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.2e-71 273.9 337 49.0
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.0e-71 273.1 339 49.9
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 5.9e-71 271.6 339 46.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.9e-71 271.6 340 47.6
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.9e-71 271.6 336 48.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.0e-70 270.8 341 48.4
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.0e-70 270.8 342 44.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.7e-70 270.0 359 45.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-70 269.6 353 44.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.2e-70 269.6 340 45.3
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.2e-70 269.6 333 49.2
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.9e-70 269.2 340 47.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 6.5e-70 268.1 331 48.3
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 6.5e-70 268.1 339 45.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 8.5e-70 267.7 341 48.1
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.4e-69 266.9 335 46.0
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.4e-69 266.9 337 46.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-69 266.9 334 48.5
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.4e-69 266.9 339 44.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.9e-69 266.5 325 48.9
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.5e-69 266.2 338 46.2
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 3.2e-69 265.8 338 47.6
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-69 265.4 338 45.9
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.2e-69 265.4 331 47.7
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 7.2e-69 264.6 334 47.6
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 9.4e-69 264.2 338 45.6
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-68 263.5 336 45.8
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.1e-68 263.1 336 47.3
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.7e-68 262.7 335 45.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.7e-68 262.7 341 46.0
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-68 262.7 333 48.9
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 3.6e-68 262.3 337 45.7
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.7e-68 261.9 331 46.8
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 4.7e-68 261.9 333 48.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 6.1e-68 261.5 345 45.2
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.0e-67 260.8 338 44.7
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-67 260.4 334 47.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.8e-67 260.0 337 45.1
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.3e-67 259.6 340 45.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.7e-67 258.1 338 44.7
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.8e-67 257.7 334 45.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.8e-67 257.7 336 46.4
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.1e-66 257.3 340 45.6
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.0e-66 256.5 345 44.9
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.3e-66 255.8 338 42.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.3e-66 255.8 340 45.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 3.3e-66 255.8 321 45.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 7.4e-66 254.6 338 48.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 7.4e-66 254.6 337 46.9
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 9.7e-66 254.2 339 44.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.3e-65 253.8 233 57.1
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.7e-65 253.4 341 43.7
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.8e-65 252.7 331 41.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.8e-65 251.9 336 44.9
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.1e-64 250.8 335 44.5
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.4e-64 250.4 336 44.0
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.8e-64 250.0 336 44.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-64 248.8 341 45.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 7.0e-64 248.1 341 44.3
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-63 247.3 328 43.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.5e-63 246.9 338 42.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.5e-63 246.9 338 44.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.0e-63 246.5 343 44.0
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.0e-63 246.5 334 43.7
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.0e-63 246.5 340 46.5
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.0e-63 246.5 338 42.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.6e-63 246.1 338 43.2
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.5e-63 245.7 337 44.5
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.9e-63 245.0 333 44.4
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.0e-62 244.2 335 45.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.7e-62 243.4 334 43.7
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.7e-62 243.4 338 40.5
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.2e-62 243.0 339 44.5
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.9e-62 242.7 338 43.2
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.9e-62 242.7 338 44.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.8e-62 242.3 344 45.1
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 5.0e-62 241.9 334 42.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-61 240.7 338 44.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.1e-61 240.7 335 43.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.1e-61 240.7 339 40.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.5e-61 240.4 338 44.4
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.9e-61 240.0 338 42.6
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.9e-61 240.0 339 44.0
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.5e-61 239.6 332 41.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.2e-61 238.8 337 45.1
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.6e-60 236.9 339 40.4
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 2.1e-60 236.5 336 43.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.7e-60 236.1 338 42.3
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.1e-60 235.0 343 42.9
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.0e-59 232.3 299 46.5
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.0e-58 229.9 337 39.8
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.8e-57 225.3 336 39.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.1e-56 224.2 439 35.8
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.6e-55 220.3 338 41.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.1e-52 208.4 300 44.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.4e-50 202.6 332 38.3
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.2e-49 199.9 421 36.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.8e-49 198.7 331 36.6
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.3e-49 198.0 264 45.8
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 4.7e-44 182.2 165 63.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 8.0e-44 181.4 154 57.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.0e-43 181.0 333 33.3
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.4e-43 180.6 155 65.8
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-43 179.9 191 56.5
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 6.8e-43 178.3 342 32.7
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.5e-42 177.2 291 40.5
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 3.4e-42 176.0 152 59.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 7.5e-42 174.9 333 33.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.7e-41 172.6 164 57.3
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-39 166.0 182 51.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 5.9e-39 165.2 288 39.9
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.7e-38 163.7 284 38.4
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 3.6e-36 156.0 205 43.9
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 8.0e-36 154.8 151 52.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.0e-34 150.2 88 80.7
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.0e-34 150.2 293 38.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.4e-34 149.4 156 52.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 4.4e-34 149.1 132 54.5
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 3.7e-33 146.0 127 57.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.9e-33 145.6 88 73.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 8.3e-33 144.8 87 78.2
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.1e-32 144.4 233 36.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.1e-32 142.5 125 56.8
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.9e-31 138.7 151 54.3
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 4.0e-27 125.9 101 62.4
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 4.0e-27 125.9 268 31.0
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.6e-26 123.2 270 31.5
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-24 116.7 238 36.6
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.7e-22 110.5 104 59.6
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.3e-21 106.3 68 66.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.6e-21 105.5 87 57.5
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.0e-15 85.5 51 64.7
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.4e-09 65.1 59 55.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 7.8e-07 58.5 75 58.7
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-06 58.2 38 68.4


User provided reference genes

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