Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 2.4e-201 705.3 352 100.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 4.7e-149 531.6 353 75.4
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.0e-147 526.2 353 73.4
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.4e-145 520.0 353 72.8
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.6e-144 516.5 351 73.5
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 3.9e-143 511.9 306 79.1
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 6.6e-143 511.1 356 71.3
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.9e-142 509.6 357 71.7
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 2.5e-142 509.2 352 71.0
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 4.7e-141 505.0 353 71.1
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.0e-140 503.8 353 71.4
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 1.4e-140 503.4 353 71.4
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.2e-140 501.5 353 70.8
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 8.9e-140 500.7 355 70.1
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 8.9e-140 500.7 331 74.0
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-139 500.4 353 70.8
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.2e-139 500.4 353 71.1
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 7.5e-139 497.7 352 69.9
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 9.8e-139 497.3 353 70.0
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 1.3e-138 496.9 352 69.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.9e-138 495.7 338 72.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 8.3e-138 494.2 353 68.3
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.1e-137 493.8 353 68.3
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.4e-137 492.7 382 66.0
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 3.2e-137 492.3 353 69.7
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 9.2e-137 490.7 349 68.2
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 1.2e-136 490.3 357 68.3
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.6e-136 490.0 349 68.8
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.6e-136 490.0 353 70.0
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.7e-136 489.2 349 68.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 4.6e-136 488.4 357 68.3
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 4.6e-136 488.4 349 68.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 7.8e-136 487.6 311 76.2
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 7.8e-136 487.6 355 69.6
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.7e-135 486.5 311 75.6
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 2.3e-135 486.1 349 70.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 3.0e-135 485.7 383 64.0
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 3.9e-135 485.3 350 67.1
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.0e-135 485.0 349 67.9
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 1.1e-134 483.8 353 67.7
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.9e-134 483.0 353 67.1
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 3.3e-134 482.3 353 66.9
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 7.3e-134 481.1 352 67.3
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.6e-133 479.9 327 70.3
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.1e-133 479.6 349 68.2
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.1e-133 479.6 355 66.2
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 3.6e-133 478.8 345 69.6
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.6e-133 478.8 349 66.2
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 4.7e-133 478.4 348 67.0
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 8.1e-133 477.6 352 67.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.8e-132 476.5 354 66.7
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 5.2e-132 474.9 318 71.7
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 6.8e-132 474.6 353 66.6
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 6.8e-132 474.6 311 74.3
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 8.9e-132 474.2 350 67.1
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.2e-131 473.8 350 68.3
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 2.6e-131 472.6 354 66.9
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.6e-131 472.6 350 66.6
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 5.8e-131 471.5 348 66.7
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 7.5e-131 471.1 330 70.6
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 9.8e-131 470.7 304 73.7
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-130 470.3 354 67.5
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-130 470.3 354 67.5
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 1.3e-130 470.3 352 65.9
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.9e-130 469.2 349 66.5
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 3.7e-130 468.8 316 69.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.1e-128 463.0 350 66.9
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.7e-128 462.6 354 65.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.5e-128 462.2 347 66.6
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 4.6e-128 461.8 306 72.9
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.0e-127 460.7 326 69.6
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-127 460.3 310 71.9
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.1e-126 457.2 353 66.6
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.5e-126 456.8 354 62.7
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 4.3e-126 455.3 347 65.1
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 3.1e-124 449.1 385 58.4
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.7e-122 443.4 308 69.8
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.7e-122 443.4 326 65.6
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.2e-122 443.0 331 65.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.9e-121 439.9 305 71.1
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 4.1e-121 438.7 306 66.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 9.2e-121 437.6 307 71.3
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.2e-120 437.2 351 63.0
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.6e-120 436.8 306 69.6
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.6e-120 436.8 306 69.3
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 2.1e-120 436.4 307 71.7
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 2.1e-120 436.4 279 74.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 2.7e-120 436.0 352 62.5
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 3.5e-120 435.6 306 70.6
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.5e-120 435.6 305 70.2
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 4.6e-120 435.3 306 69.0
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.0e-119 432.6 305 69.2
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 3.9e-119 432.2 306 70.3
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 5.1e-119 431.8 327 65.1
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 8.6e-119 431.0 285 73.3
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.1e-118 430.6 306 69.3
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 7.3e-118 427.9 280 73.9
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.2e-117 427.2 284 73.2
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.6e-117 426.8 325 63.7
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 2.4e-116 422.9 286 70.6
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 5.2e-116 421.8 345 62.6
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 7.6e-115 417.9 357 61.3
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 8.4e-114 414.5 347 59.4
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 5.4e-113 411.8 309 64.4
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 4.6e-112 408.7 347 58.8
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.3e-111 406.4 329 60.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 3.0e-111 406.0 347 58.5
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 8.7e-111 404.4 347 58.5
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 8.7e-111 404.4 347 58.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 4.3e-110 402.1 347 58.2
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 5.6e-110 401.7 347 57.9
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 5.6e-110 401.7 296 68.2
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 9.6e-110 401.0 347 57.6
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 9.6e-110 401.0 347 57.9
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 6.2e-109 398.3 337 58.2
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 9.3e-105 384.4 311 64.0
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.6e-104 383.6 309 62.5
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 4.6e-104 382.1 308 64.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.9e-104 381.3 282 63.8
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 6.9e-100 368.2 311 55.3
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.2e-99 367.5 335 58.8
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 4.5e-99 365.5 335 58.5
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.5e-99 365.5 251 70.1
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 9.9e-99 364.4 392 51.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 4.9e-98 362.1 303 56.1
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.9e-97 360.1 344 51.7
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 1.3e-95 354.0 327 57.5
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 3.0e-95 352.8 268 64.2
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.6e-93 347.1 311 57.9
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 6.9e-92 341.7 309 52.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.5e-91 340.5 361 49.6
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.6e-88 330.5 352 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.5e-86 323.9 344 48.8
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 3.7e-85 319.3 235 63.8
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.8e-84 317.0 362 46.1
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 7.9e-80 301.6 200 73.5
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.9e-78 297.0 284 54.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 4.1e-76 289.3 235 63.0
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 6.9e-76 288.5 320 52.5
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.1e-73 281.2 164 79.9
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.7e-61 240.7 220 59.1
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.7e-61 239.6 140 80.7
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.7e-58 230.7 173 58.4
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.7e-58 230.7 173 58.4
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.4e-46 189.9 112 77.7
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.2e-43 181.4 109 78.9
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 4.5e-43 179.5 324 31.8
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.7e-43 178.7 112 75.9
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.4e-36 157.9 312 34.3
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 5.6e-33 146.0 326 29.4
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 7.5e-30 135.6 164 45.7
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 4.6e-27 126.3 129 51.2
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 3.3e-25 120.2 372 30.1
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.6e-24 116.7 85 64.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 3.5e-19 100.1 170 38.2
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 2.5e-17 94.0 279 26.9
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 2.3e-15 87.4 105 42.9


User provided reference genes

Program Settings