Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 0.0e+00 1536.9 765 100.0
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 1.3e-252 876.7 743 60.7
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.2e-245 853.6 731 58.3
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.2e-245 853.6 761 58.2
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 6.7e-241 837.8 796 55.9
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 5.6e-240 834.7 791 55.6
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 6.9e-238 827.8 747 56.4
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 9.0e-238 827.4 753 56.7
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.4e-237 825.5 727 56.7
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 4.5e-237 825.1 784 54.6
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 5.8e-237 824.7 795 55.5
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.9e-235 819.7 747 56.6
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.9e-235 819.7 741 55.9
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 3.2e-235 818.9 737 56.0
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.2e-235 818.5 745 54.9
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 2.1e-234 816.2 745 54.8
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.1e-234 816.2 740 56.9
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 1.0e-233 813.9 736 56.5
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.7e-233 810.8 749 56.2
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 1.1e-232 810.4 736 56.5
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 6.2e-231 804.7 751 54.9
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.8e-230 803.1 787 54.3
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 5.3e-230 801.6 787 53.9
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.2e-229 800.4 770 54.5
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.5e-229 800.0 734 55.3
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.4e-229 798.9 753 54.3
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 7.6e-229 797.7 744 54.6
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 1.9e-227 793.1 745 54.9
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 2.5e-227 792.7 747 55.2
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 9.3e-227 790.8 783 53.4
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.2e-226 790.4 781 54.2
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.1e-226 789.6 740 55.0
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 3.5e-226 788.9 786 53.7
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.0e-225 785.8 778 53.9
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 5.1e-225 785.0 748 54.0
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 5.1e-225 785.0 785 53.1
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 5.1e-225 785.0 784 52.3
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 6.7e-225 784.6 805 50.8
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-224 783.9 762 55.0
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.3e-223 780.4 739 54.0
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 2.8e-223 779.2 782 52.6
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 4.8e-223 778.5 751 53.8
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 8.2e-223 777.7 761 54.9
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.1e-222 777.3 731 55.1
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 5.3e-222 775.0 768 53.0
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 2.0e-221 773.1 749 52.9
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.4e-221 772.3 783 52.0
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.4e-221 772.3 788 53.6
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.9e-220 769.2 746 53.5
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 6.5e-220 768.1 783 52.6
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.1e-219 767.3 746 54.6
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 4.2e-219 765.4 746 53.4
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 4.2e-219 765.4 682 56.6
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 7.2e-219 764.6 780 52.4
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.6e-218 763.5 783 51.5
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 1.6e-218 763.5 788 51.8
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 6.1e-218 761.5 730 52.6
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.4e-217 760.4 783 52.2
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.4e-217 760.4 759 52.6
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 2.3e-217 759.6 774 52.1
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.9e-217 758.8 783 51.5
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.9e-217 758.8 777 51.6
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.9e-217 758.8 770 52.1
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 5.1e-217 758.4 783 51.2
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 8.8e-217 757.7 782 52.6
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 7.4e-216 754.6 776 51.0
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.4e-216 754.6 778 51.4
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.7e-216 754.2 769 51.8
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.8e-215 752.7 759 52.8
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 2.8e-215 752.7 720 54.7
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.3e-215 751.5 750 52.0
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 8.2e-215 751.1 783 51.0
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 8.2e-215 751.1 780 51.2
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.1e-214 750.7 738 52.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 3.1e-214 749.2 780 50.8
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 5.9e-213 745.0 776 51.3
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.0e-212 744.2 782 49.7
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.3e-212 743.8 780 52.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 1.3e-212 743.8 763 51.2
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 3.8e-212 742.3 752 52.5
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 5.0e-212 741.9 773 52.0
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 5.0e-212 741.9 762 51.6
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 5.0e-212 741.9 767 51.9
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 6.5e-212 741.5 781 51.5
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.5e-211 738.4 746 51.7
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.7e-210 735.3 748 51.5
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.0e-209 734.2 770 50.6
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.0e-209 734.2 756 51.9
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.4e-209 733.8 729 53.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 1.4e-209 733.8 748 52.5
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 1.8e-209 733.4 779 50.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.8e-209 733.4 749 51.1
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.8e-209 733.4 749 51.1
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 8.8e-209 731.1 773 49.9
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 2.0e-208 729.9 804 50.9
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 5.7e-208 728.4 778 50.9
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 3.7e-207 725.7 770 50.3
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 3.7e-207 725.7 825 49.3
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.8e-206 723.4 777 50.5
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.4e-206 723.0 789 49.2
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 5.3e-206 721.8 752 52.1
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 5.3e-206 721.8 761 50.9
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.6e-205 719.5 761 50.2
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.9e-204 716.1 767 49.7
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 7.2e-203 711.4 748 49.5
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.2e-202 710.7 768 50.1
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.3e-201 706.4 707 53.5
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 5.7e-200 701.8 774 48.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 5.7e-200 701.8 785 49.7
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 3.7e-199 699.1 721 52.7
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 4.8e-199 698.7 777 47.7
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 4.8e-199 698.7 782 49.7
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.8e-198 696.8 772 50.3
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 2.2e-196 689.9 738 51.1
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.5e-195 687.2 731 50.2
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 2.4e-190 669.8 700 51.4
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 7.7e-189 664.8 778 48.3
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 7.7e-189 664.8 864 43.6
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 5.0e-188 662.1 731 48.0
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 6.5e-188 661.8 675 52.4
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 2.6e-184 649.8 747 47.9
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 3.4e-184 649.4 750 49.1
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 1.3e-183 647.5 747 47.9
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.8e-182 643.7 716 51.5
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 2.0e-181 640.2 764 48.4
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 2.3e-180 636.7 748 47.2
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 5.0e-180 635.6 759 48.2
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 8.6e-180 634.8 751 47.3
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.1e-179 634.4 748 46.9
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.1e-179 634.4 748 46.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 7.3e-179 631.7 762 48.2
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 3.6e-178 629.4 742 48.4
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.8e-174 617.1 747 43.6
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 1.6e-173 614.0 761 46.5
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.9e-173 612.1 652 50.8
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.8e-173 611.7 731 46.8
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.0e-172 609.8 762 47.1
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 5.6e-171 605.5 844 41.6
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 5.6e-171 605.5 547 57.0
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 6.6e-164 582.0 458 63.3
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 1.4e-161 574.3 415 66.0
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.9e-159 565.8 734 45.1
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 3.2e-158 563.1 664 47.6
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.6e-154 549.7 971 36.5
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.4e-152 543.1 940 35.5
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 8.1e-146 521.9 443 60.7
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 2.0e-144 517.3 552 50.2
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 7.6e-144 515.4 667 45.0
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.5e-139 501.1 671 43.4
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 2.6e-136 490.3 389 62.5
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 7.6e-136 488.8 424 59.4
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 4.9e-135 486.1 660 42.3
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.5e-123 448.0 320 67.5
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 8.1e-122 442.2 443 54.0
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 4.8e-114 416.4 477 45.7
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 4.5e-112 409.8 766 35.9
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.6e-96 357.5 426 48.1
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.9e-87 327.4 231 68.8
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 1.7e-79 301.6 469 40.7
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 5.6e-62 243.4 318 43.7
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 4.0e-60 237.3 204 56.4
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 5.7e-59 233.4 338 42.3
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 4.6e-48 197.2 147 66.0
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 4.0e-44 184.1 116 70.7
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 3.6e-37 161.0 158 54.4
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 6.0e-32 143.7 84 81.0
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 1.2e-29 136.0 135 48.9
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 1.2e-29 136.0 299 30.1
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 4.7e-29 134.0 112 60.7
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 2.2e-26 125.2 149 43.6
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 9.3e-25 119.8 156 44.2
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 3.5e-24 117.9 157 44.6
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 1.0e-23 116.3 168 41.1
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 2.3e-23 115.2 157 43.3
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 3.9e-23 114.4 157 43.9
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 9.9e-19 99.8 104 51.9
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 3.8e-18 97.8 57 73.7
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 3.2e-17 94.7 57 70.2
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 6.7e-15 87.0 83 54.2
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.3e-13 82.8 153 34.6
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 3.8e-10 71.2 46 63.0
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 1.1e-09 69.7 80 46.2
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 3.5e-08 64.7 222 26.6
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 7.9e-08 63.5 54 57.4


User provided reference genes

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