Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 2404.8 1234 100.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1261.1 1247 56.1
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1232.2 1247 55.1
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1199.5 1280 52.6
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1186.4 1255 53.1
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1185.2 1256 52.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1162.5 1259 50.9
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1160.6 1257 51.8
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1153.3 1253 52.6
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1148.7 1246 51.9
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1140.6 1255 52.0
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1131.7 1262 50.7
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1125.5 1237 50.6
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1124.0 1235 50.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1123.2 1243 50.9
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1122.8 1236 50.4
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1120.5 1244 51.2
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1120.1 1251 50.4
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1117.8 1241 51.4
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1115.5 1240 50.9
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1114.8 1243 49.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1108.6 1247 49.1
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1106.7 1257 49.9
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1102.4 1242 48.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1101.7 1243 48.8
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1099.3 1242 49.2
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1088.2 1248 49.4
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1087.0 1238 48.5
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1086.6 1238 48.5
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1086.2 1246 49.8
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1238 48.4
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1246 49.4
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1078.2 1251 48.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1075.1 1206 51.3
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 8.4e-312 1073.9 1242 49.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 8.4e-312 1073.5 1239 48.7
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.5e-306 1055.8 1262 47.9
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 5.6e-306 1054.7 1244 49.8
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 7.3e-306 1054.3 1256 48.1
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 9.5e-306 1053.9 1221 49.3
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 2.1e-305 1052.7 1265 47.4
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 3.6e-305 1052.0 1250 47.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 1.8e-304 1049.7 1261 47.7
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 2.0e-303 1046.2 1246 47.4
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 7.6e-303 1044.3 1251 47.1
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 7.6e-303 1044.3 1258 47.5
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 2.9e-302 1042.3 1252 46.7
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 2.9e-302 1042.3 1234 47.6
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 1.3e-299 1033.5 1243 47.4
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.7e-299 1033.1 1255 47.3
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 3.0e-299 1032.3 1241 47.5
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 3.0e-299 1032.3 1243 47.3
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 3.9e-299 1031.9 1241 47.1
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 8.6e-299 1030.8 1234 46.9
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 8.6e-299 1030.8 1248 47.2
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 9.6e-298 1027.3 1245 47.7
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 1.6e-297 1026.5 1231 46.7
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 2.1e-297 1026.2 1238 47.3
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 4.7e-297 1025.0 1248 46.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 4.0e-296 1021.9 1240 47.0
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 3.4e-295 1018.8 1234 46.2
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 4.9e-294 1015.0 1256 47.1
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 4.9e-294 1015.0 1246 47.5
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 1.9e-293 1013.1 1239 46.3
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 1.2e-292 1010.4 1254 47.1
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.2e-292 1010.4 1260 47.1
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 2.7e-292 1009.2 1290 45.8
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 7.8e-292 1007.7 1257 47.0
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 2.1e-289 999.6 1251 47.2
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 1.2e-287 993.8 1096 50.5
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 3.4e-287 992.3 1246 46.5
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 9.9e-287 990.7 1238 45.6
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.7e-284 982.6 1233 45.5
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.7e-284 982.6 1233 45.4
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 3.9e-283 978.8 1234 45.3
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.1e-283 978.4 1236 46.4
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.4e-280 970.3 1015 53.7
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 1.0e-275 954.1 1266 44.4
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.1e-273 946.4 1258 44.5
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 4.5e-271 938.7 1250 44.2
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 6.5e-270 934.9 1248 44.1
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 3.3e-266 922.5 1181 47.7
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.5e-263 913.7 924 53.7
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 2.0e-263 913.3 1242 43.9
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 6.5e-262 908.3 932 53.8
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 2.5e-261 906.4 1249 44.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 8.2e-257 891.3 1246 43.4
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 7.2e-245 851.7 1237 41.6
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 5.2e-243 845.5 873 52.7
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.0e-239 833.6 1199 42.2
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 5.0e-238 828.9 1026 44.4
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.9e-217 759.2 980 45.4
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 4.6e-207 726.1 847 48.5
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.3e-206 724.5 1221 39.1
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.3e-206 723.8 1281 36.5
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.9e-193 680.2 891 44.3
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.2e-191 674.9 1201 36.6
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 9.5e-189 665.2 988 43.2
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.0e-187 659.8 936 42.8
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.8e-154 549.7 1117 33.3
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.6e-151 540.0 861 38.0
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.9e-150 537.0 572 51.4
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.5e-149 534.3 884 37.9
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 6.5e-145 519.6 804 39.1
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 9.4e-144 515.8 871 37.7
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 3.6e-119 434.1 429 56.6
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.9e-114 416.8 659 38.8
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 7.2e-104 383.3 361 58.2
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.4e-101 374.4 597 38.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 8.6e-89 333.2 351 55.8
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.5e-88 332.4 343 57.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 8.0e-87 326.6 340 56.8
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.2e-85 322.8 446 44.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 6.2e-79 300.4 452 37.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 9.2e-75 286.6 237 61.2
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.1e-70 273.1 663 30.2
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 4.8e-63 247.7 450 34.4
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 7.8e-58 230.3 370 38.9
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-56 226.1 337 36.5
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 4.0e-54 218.0 393 34.4
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.2e-43 181.4 294 36.4
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 1.6e-42 179.5 374 34.0
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.8e-37 161.0 283 37.5
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.7e-28 132.9 173 39.9
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 9.4e-27 127.1 316 32.3
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.2e-18 100.1 111 45.9
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 9.7e-16 90.5 204 34.8
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.4e-14 85.9 134 35.1
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.2e-13 83.6 134 36.6
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 2.0e-13 82.8 412 26.7
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.7e-12 79.7 134 33.6
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 3.8e-12 78.6 124 36.3
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 5.7e-08 64.7 62 56.5


User provided reference genes

Program Settings