Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 2.7e-80 302.0 158 100.0
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 3.3e-25 119.0 138 45.7
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.1e-24 116.3 197 40.6
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.0e-23 114.0 182 41.8
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.5e-22 110.2 185 39.5
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 9.8e-22 107.5 197 40.1
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 9.8e-22 107.5 197 39.6
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.9e-21 105.9 189 41.3
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 3.7e-21 105.5 184 40.8
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 6.4e-21 104.8 169 42.0
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.1e-20 104.0 220 40.5
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.1e-20 104.0 127 45.7
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.1e-20 104.0 184 39.7
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.4e-20 103.6 204 37.3
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.4e-20 102.8 211 40.3
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 2.4e-20 102.8 188 37.2
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 3.2e-20 102.4 199 38.2
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 4.1e-20 102.1 157 41.4
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 5.4e-20 101.7 228 36.4
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 9.2e-20 100.9 166 41.6
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 1.2e-19 100.5 191 36.6
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 2.7e-19 99.4 184 39.1
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.6e-19 98.6 185 37.8
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 7.8e-19 97.8 185 38.9
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 7.8e-19 97.8 187 41.7
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 1.0e-18 97.4 128 45.3
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.3e-18 97.1 184 38.0
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.3e-18 97.1 151 42.4
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.7e-18 96.7 166 40.4
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.7e-18 96.7 144 41.7
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.0e-18 95.9 154 39.6
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 5.0e-18 95.1 153 38.6
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 5.0e-18 95.1 179 38.0
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 6.6e-18 94.7 150 41.3
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.5e-17 93.6 202 36.1
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 1.9e-17 93.2 156 41.0
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.9e-17 93.2 169 41.4
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 2.5e-17 92.8 176 38.1
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.6e-17 91.7 102 50.0
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 9.5e-17 90.9 186 37.1
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.6e-16 90.1 167 37.7
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 2.1e-16 89.7 190 36.8
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 2.8e-16 89.4 141 44.7
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 2.8e-16 89.4 160 41.9
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 4.7e-16 88.6 171 37.4
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.7e-16 88.6 103 48.5
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 4.7e-16 88.6 172 37.2
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.2e-16 88.2 164 37.8
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.3e-15 86.3 180 35.0
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.3e-15 86.3 211 35.1
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 2.3e-15 86.3 189 34.4
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.1e-15 85.9 174 36.8
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 4.0e-15 85.5 181 34.3
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.0e-15 85.5 181 34.3
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 5.2e-15 85.1 172 36.0
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.2e-15 85.1 164 36.6
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 8.9e-15 84.3 155 36.8
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 1.2e-14 84.0 131 43.5
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.5e-14 83.6 180 42.2
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 1.5e-14 83.6 176 39.8
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 2.0e-14 83.2 176 36.4
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 3.4e-14 82.4 164 35.4
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 5.8e-14 81.6 125 43.2
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 5.8e-14 81.6 184 34.8
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 9.8e-14 80.9 115 48.7
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 2.2e-13 79.7 203 32.5
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 6.4e-13 78.2 181 37.0
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 6.4e-13 78.2 133 40.6
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.1e-12 77.4 130 36.2
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 1.4e-12 77.0 182 36.3
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 3.2e-12 75.9 196 32.1
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 4.1e-12 75.5 125 37.6
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 5.4e-12 75.1 172 37.8
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.4e-12 75.1 199 33.2
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 7.1e-12 74.7 167 35.3
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 9.2e-12 74.3 146 38.4
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 3.5e-11 72.4 140 35.7
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.0e-10 70.9 97 42.3
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.3e-10 70.5 150 37.3
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.3e-10 70.5 150 37.3
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 1.7e-10 70.1 176 35.8
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.0e-10 69.3 112 42.0
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 3.0e-10 69.3 173 32.4
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 3.9e-10 68.9 88 43.2
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.9e-10 68.9 107 43.0
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 5.1e-10 68.6 172 36.0
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.5e-09 67.0 162 32.1
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 1.9e-09 66.6 186 32.8
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 2.5e-09 66.2 162 34.0
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 3.3e-09 65.9 57 61.4
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 3.3e-09 65.9 229 29.3
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 3.3e-09 65.9 144 36.1
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 3.3e-09 65.9 96 44.8
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 4.3e-09 65.5 77 51.9
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 4.3e-09 65.5 183 31.1
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 5.6e-09 65.1 128 40.6
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 7.3e-09 64.7 172 32.6
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 7.3e-09 64.7 138 37.0
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 1.2e-08 63.9 50 58.0
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.6e-08 63.5 46 58.7
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.6e-08 63.5 140 37.9
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.6e-08 63.5 142 37.3
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 2.1e-08 63.2 161 32.9
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 3.6e-08 62.4 182 33.0
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 3.6e-08 62.4 143 33.6
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 4.7e-08 62.0 90 42.2
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 4.7e-08 62.0 113 41.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 8.1e-08 61.2 81 44.4
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 8.1e-08 61.2 65 49.2
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 1.1e-07 60.8 152 34.2
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.4e-07 60.5 95 43.2
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 1.4e-07 60.5 84 44.0
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.1e-07 59.3 51 54.9
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 4.0e-07 58.9 192 32.8
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.2e-07 58.5 110 39.1
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 5.2e-07 58.5 54 51.9
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 8.9e-07 57.8 144 34.7
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 8.9e-07 57.8 91 41.8
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 1.2e-06 57.4 135 33.3
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 1.2e-06 57.4 56 50.0
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 2.0e-06 56.6 60 48.3
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 3.4e-06 55.8 86 39.5
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 4.4e-06 55.5 125 36.0
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 4.4e-06 55.5 125 36.0
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 4.4e-06 55.5 110 40.9
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 4.4e-06 55.5 135 34.1
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 5.8e-06 55.1 110 38.2
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 5.8e-06 55.1 67 47.8
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 7.6e-06 54.7 136 33.1
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 9.9e-06 54.3 56 53.6


User provided reference genes

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