Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 3.2e-163 578.6 334 100.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-100 370.5 286 70.6
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.1e-99 367.5 284 69.7
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.0e-97 359.4 291 68.7
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-96 357.5 327 62.7
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 8.3e-95 351.3 292 67.5
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.4e-94 350.5 325 62.8
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.4e-94 350.5 325 62.8
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.5e-93 345.9 298 65.1
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.7e-93 344.7 297 68.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.7e-92 343.6 307 64.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 6.3e-87 325.1 291 65.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 9.2e-86 321.2 306 60.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.2e-85 320.9 291 63.6
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.3e-84 317.4 287 61.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-84 317.4 295 63.4
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.8e-84 315.8 297 62.6
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 5.0e-84 315.5 314 57.6
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.6e-84 315.1 295 62.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 8.6e-84 314.7 295 61.0
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.8e-82 309.7 278 62.9
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 4.0e-81 305.8 239 69.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 5.2e-81 305.4 300 61.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-80 303.5 292 62.0
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 3.4e-80 302.8 292 60.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.8e-78 297.0 298 60.7
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.4e-78 296.6 308 56.5
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 9.2e-78 294.7 311 57.9
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 5.9e-77 292.0 303 58.4
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.0e-76 291.2 295 59.0
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.0e-76 289.7 290 57.9
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.6e-74 283.9 314 56.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.1e-74 283.5 305 55.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.8e-74 283.1 286 58.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 3.6e-74 282.7 297 56.2
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 4.0e-73 279.3 297 56.9
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-71 274.2 293 54.6
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.9e-71 273.1 286 55.2
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.9e-71 273.1 306 55.2
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.7e-71 272.7 305 51.5
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.3e-71 271.6 293 54.3
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 8.3e-71 271.6 289 57.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.9e-70 270.4 292 56.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.9e-70 270.4 293 54.3
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.2e-70 269.6 299 55.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.2e-69 267.7 280 58.9
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.6e-69 267.3 292 53.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.5e-69 266.2 292 56.2
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.6e-69 265.8 286 56.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.7e-68 263.8 302 55.3
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.3e-68 263.5 294 55.1
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.9e-68 262.7 284 54.6
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 6.6e-68 261.9 293 54.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.6e-68 261.9 294 54.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.3e-67 259.6 304 54.9
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.3e-67 259.6 290 54.1
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 3.3e-67 259.6 283 57.2
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.3e-67 259.2 290 54.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 4.3e-67 259.2 301 54.8
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.3e-67 259.2 293 54.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 7.3e-67 258.5 290 53.8
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.3e-67 258.5 290 53.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 7.3e-67 258.5 296 53.4
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 7.3e-67 258.5 290 54.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.3e-67 258.5 299 56.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.2e-66 257.7 290 54.1
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.6e-66 257.3 298 54.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.6e-66 257.3 289 54.3
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.1e-66 256.9 312 52.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.1e-66 256.9 293 54.9
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.8e-66 256.5 268 57.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.6e-66 256.1 281 54.8
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.7e-66 255.8 293 54.6
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.7e-66 255.8 295 55.9
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 6.2e-66 255.4 299 55.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 6.2e-66 255.4 299 55.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-65 254.6 298 53.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.8e-65 253.8 309 51.8
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.3e-65 253.4 307 52.4
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 3.1e-65 253.1 296 55.4
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 4.0e-65 252.7 301 53.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 6.8e-65 251.9 292 54.5
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 8.9e-65 251.5 291 54.0
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.6e-64 250.0 295 53.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 3.4e-64 249.6 291 52.9
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 5.8e-64 248.8 293 53.6
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 5.8e-64 248.8 310 51.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 7.5e-64 248.4 297 53.5
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 7.5e-64 248.4 204 65.7
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.3e-63 247.7 298 53.7
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.9e-63 246.5 308 52.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 4.9e-63 245.7 308 51.3
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.4e-62 243.4 295 53.2
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 3.2e-62 243.0 294 54.1
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.1e-62 242.7 285 53.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 9.2e-62 241.5 334 45.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.1e-61 240.4 299 51.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 6.0e-61 238.8 293 52.2
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 1.0e-60 238.0 259 58.7
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.0e-60 236.5 296 51.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.6e-59 232.3 292 51.7
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 9.5e-59 231.5 292 50.7
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 3.6e-58 229.6 311 49.2
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 6.2e-58 228.8 270 52.6
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.3e-57 226.9 240 56.2
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 5.2e-57 225.7 156 75.0
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-56 224.6 288 49.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 5.8e-56 222.2 227 56.8
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.6e-56 221.9 228 57.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.9e-55 219.9 286 50.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 4.9e-55 219.2 304 47.4
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 6.4e-55 218.8 287 51.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-54 218.0 287 51.2
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.9e-54 217.2 295 51.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.9e-54 217.2 291 51.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 5.4e-54 215.7 286 50.3
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.2e-54 214.9 295 50.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.7e-53 213.4 291 50.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.6e-53 212.6 167 68.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 6.0e-53 212.2 294 51.4
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.0e-52 211.5 290 51.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.0e-52 209.9 297 48.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.9e-52 209.5 288 49.3
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.1e-52 209.1 294 49.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.3e-51 206.5 294 48.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.3e-51 206.5 299 46.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 4.3e-51 206.1 296 47.6
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.8e-50 203.4 287 51.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.1e-49 201.4 244 51.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.4e-47 192.2 165 63.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.2e-46 189.5 172 61.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.0e-45 185.7 122 74.6
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.9e-43 180.6 291 41.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.5e-43 180.3 293 43.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.8e-42 176.8 156 62.8
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.6e-42 176.4 296 41.6
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-41 174.1 246 48.8
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.8e-40 169.1 292 42.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.3e-39 167.9 298 40.9
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 5.4e-38 162.5 176 54.5
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.0e-36 158.3 285 38.2
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 5.6e-35 152.5 168 56.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.2e-31 140.6 169 50.9
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.9e-31 140.2 243 43.2
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.4e-31 138.7 126 58.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 8.4e-31 138.7 212 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.2e-30 136.3 118 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 4.2e-30 136.3 122 58.2
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-28 131.0 124 57.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.1e-28 129.4 287 35.5
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.5e-27 127.9 157 53.5
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 8.1e-26 122.1 199 37.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 9.0e-25 118.6 144 55.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.4e-22 111.3 75 74.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-18 98.2 172 40.7
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.4e-14 84.7 142 43.0
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.0e-12 78.6 160 41.9
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.9e-11 74.3 103 50.5
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 3.3e-11 73.6 95 48.4
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.4e-09 67.4 54 59.3
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 6.9e-09 65.9 51 66.7
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.0e-07 62.0 92 43.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-06 58.2 46 60.9


User provided reference genes

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