Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010717 Daucus carota HOM05D000838 ORTHO05D000656 3.7e-41 171.0 80 100.0
DCAR_004701 Daucus carota HOM05D002279 ORTHO05D002644 6.3e-17 90.5 54 72.2
DCAR_029031 Daucus carota HOM05D000838 ORTHO05D000656 1.5e-13 79.3 55 67.3
Dinv42145 Davidia involucrata HOM05D000838 ORTHO05D000656 2.6e-10 68.6 52 59.6
Oeu007279.1 Olea europaea HOM05D000838 ORTHO05D000656 3.3e-10 68.2 52 61.5
DCAR_029029 Daucus carota HOM05D000838 ORTHO05D000656 5.7e-10 67.4 54 59.3
DCAR_029030 Daucus carota HOM05D000838 ORTHO05D000656 5.7e-10 67.4 55 58.2
ECA236G3914 Erigeron canadensis HOM05D000838 ORTHO05D000656 5.7e-10 67.4 52 61.5
Actinidia17862 Actinidia chinensis HOM05D000838 ORTHO05D000656 9.7e-10 66.6 47 59.6
Lj2A75G40 Lonicera japonica HOM05D000838 ORTHO05D000656 2.2e-09 65.5 47 63.8
Nitab4.5_0003080g0120 Nicotiana tabacum HOM05D000838 ORTHO05D000656 2.8e-09 65.1 52 57.7
Sopen06g010800 Solanum pennellii HOM05D000838 ORTHO05D000656 2.8e-09 65.1 52 57.7
Solyc06g034140.3 Solanum lycopersicum HOM05D000838 ORTHO05D000656 6.3e-09 63.9 52 57.7
CAN.G330.7 Capsicum annuum HOM05D000838 ORTHO05D000656 1.4e-08 62.8 52 55.8
PGSC0003DMG400021583 Solanum tuberosum HOM05D000838 ORTHO05D000656 1.4e-08 62.8 47 61.7
Lsat_1_v5_gn_7_87101 Lactuca sativa HOM05D000838 ORTHO05D000656 2.4e-08 62.0 52 53.8
Nitab4.5_0003503g0040 Nicotiana tabacum HOM05D000838 ORTHO05D000656 2.4e-08 62.0 52 55.8
Oeu013700.2 Olea europaea HOM05D000838 ORTHO05D000656 3.1e-08 61.6 53 50.9
HanXRQChr04g0128231 Helianthus annuus HOM05D000838 ORTHO05D000656 4.1e-08 61.2 52 53.8
HanXRQChr04g0128251 Helianthus annuus HOM05D000838 ORTHO05D000656 4.1e-08 61.2 52 53.8
Nitab4.5_0003503g0050 Nicotiana tabacum HOM05D000838 ORTHO05D000656 4.1e-08 61.2 53 50.9
PGR142G0059 Punica granatum HOM05D000838 ORTHO05D000656 4.1e-08 61.2 52 57.7
Haze_01839 Corylus avellana HOM05D000838 ORTHO05D000656 5.3e-08 60.8 52 53.8
Cfa005473 Carpinus fangiana HOM05D000838 ORTHO05D000656 7.0e-08 60.5 52 53.8
Haze_01844 Corylus avellana HOM05D000838 ORTHO05D000656 7.0e-08 60.5 52 53.8
vmacro19496 Vaccinium macrocarpon HOM05D000838 ORTHO05D000656 9.1e-08 60.1 47 57.4
Peaxi162Scf00016g01953 Petunia axillaris HOM05D000838 ORTHO05D000656 1.6e-07 59.3 47 57.4
Aa31LG8G5980 Aethionema arabicum HOM05D000838 ORTHO05D000656 2.0e-07 58.9 83 39.8
Cc02_g18670 Coffea canephora HOM05D000838 ORTHO05D000656 2.0e-07 58.9 51 56.9
DCAR_019127 Daucus carota HOM05D000838 ORTHO05D000656 2.0e-07 58.9 54 51.9
GSVIVG01031762001 Vitis vinifera HOM05D000838 ORTHO05D000656 2.0e-07 58.9 52 50.0
CAN.G1041.27 Capsicum annuum HOM05D000838 ORTHO05D000656 2.7e-07 58.5 47 57.4
CiPaw.05G052100 Carya illinoinensis HOM05D000838 ORTHO05D000656 3.5e-07 58.2 52 53.8
ClCG05G009920 Citrullus lanatus HOM05D000838 ORTHO05D000656 3.5e-07 58.2 52 53.8
Sed0027612 Sechium edule HOM05D000838 ORTHO05D000656 3.5e-07 58.2 52 50.0
Rhsim05G0083100 Rhododendron simsii HOM05D000838 ORTHO05D000656 4.5e-07 57.8 47 55.3
Dinv42143 Davidia involucrata HOM05D001625 ORTHO05D002663 5.9e-07 57.4 51 51.0
Eucgr.G01455 Eucalyptus grandis HOM05D000838 ORTHO05D000656 7.7e-07 57.0 83 38.6
Solyc01g108120.3 Solanum lycopersicum HOM05D000838 ORTHO05D000656 7.7e-07 57.0 47 51.1
Sopen01g050350 Solanum pennellii HOM05D000838 ORTHO05D000656 7.7e-07 57.0 47 51.1
PGSC0003DMG400025790 Solanum tuberosum HOM05D000838 ORTHO05D000656 7.7e-07 57.0 47 51.1
HanXRQChr16g0508471 Helianthus annuus HOM05D000838 ORTHO05D000656 1.0e-06 56.6 54 48.1
Sed0001767 Sechium edule HOM05D000838 ORTHO05D000656 1.0e-06 56.6 53 49.1
Solyc01g108130.4 Solanum lycopersicum HOM05D000838 ORTHO05D000656 1.3e-06 56.2 53 49.1
Sopen01g050360 Solanum pennellii HOM05D000838 ORTHO05D000656 1.3e-06 56.2 53 49.1
PGSC0003DMG400025791 Solanum tuberosum HOM05D000838 ORTHO05D000656 1.3e-06 56.2 53 49.1
BcaC08g47520 Brassica carinata HOM05D000838 ORTHO05D000656 1.7e-06 55.8 52 51.9
A07p44620 Brassica napus HOM05D002614 ORTHO05D002794 1.7e-06 55.8 52 51.9
C06p53460 Brassica napus HOM05D002614 ORTHO05D002794 1.7e-06 55.8 52 51.9
BolC6t40361H Brassica oleracea HOM05D002614 ORTHO05D002794 1.7e-06 55.8 52 51.9
BraA07t31971Z Brassica rapa HOM05D002614 ORTHO05D002794 1.7e-06 55.8 52 51.9
CAN.G1041.29 Capsicum annuum HOM05D000838 ORTHO05D000656 1.7e-06 55.8 47 51.1
Dinv42146 Davidia involucrata HOM05D000838 ORTHO05D000656 2.2e-06 55.5 53 43.4
Eucgr.G01458 Eucalyptus grandis HOM05D000838 ORTHO05D000656 2.2e-06 55.5 54 48.1
FAN15G0539 Fragaria x ananassa HOM05D000838 ORTHO05D000656 2.2e-06 55.5 52 51.9
Hma1.2p1_0370F.1_g137930 Hydrangea macrophylla HOM05D000838 ORTHO05D000656 2.2e-06 55.5 53 47.2
Oeu006960.1 Olea europaea HOM05D000838 ORTHO05D000656 2.2e-06 55.5 53 49.1
Oeu009751.1 Olea europaea HOM05D000838 ORTHO05D000656 2.2e-06 55.5 49 53.1
Potri.004G141900 Populus trichocarpa HOM05D000838 ORTHO05D000656 2.2e-06 55.5 55 43.6
Sc07g0001360 Simmondsia chinensis HOM05D000838 ORTHO05D000656 2.2e-06 55.5 54 46.3
CSS0004698 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 2.9e-06 55.1 48 52.1
CSS0008602 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 2.9e-06 55.1 48 52.1
CsaV3_3G018660 Cucumis sativus L. HOM05D000838 ORTHO05D000656 2.9e-06 55.1 52 50.0
SalBow6G6886 Salvia bowleyana HOM05D000838 ORTHO05D000656 2.9e-06 55.1 53 45.3
SGA_v2.0_scaffold90G27670 Striga asiatica HOM05D000838 ORTHO05D000656 2.9e-06 55.1 53 45.3
Duzib132G1154 Durio zibethinus HOM05D000838 ORTHO05D000656 3.8e-06 54.7 52 51.9
Nn5g30239 Nelumbo nucifera HOM05D000838 ORTHO05D000656 3.8e-06 54.7 53 47.2
PGR042G1266 Punica granatum HOM05D000838 ORTHO05D000656 3.8e-06 54.7 52 48.1
CSS0049516 Camellia sinensis var. sinensis HOM05D000838 ORTHO05D000656 5.0e-06 54.3 53 47.2
Cpa.g.sc62.23 Carica papaya HOM05D000838 ORTHO05D000656 5.0e-06 54.3 52 50.0
Migut.B00331 Erythranthe guttata HOM05D000838 ORTHO05D000656 5.0e-06 54.3 52 46.2
PGSC0003DMG400040025 Solanum tuberosum HOM05D000838 ORTHO05D000656 5.0e-06 54.3 47 59.6
CAN.G1041.26 Capsicum annuum HOM05D000838 ORTHO05D000656 6.5e-06 53.9 53 47.2
Glyma.01G244800 Glycine max HOM05D000838 ORTHO05D000656 6.5e-06 53.9 52 48.1
Actinidia00449 Actinidia chinensis HOM05D000838 ORTHO05D000656 8.5e-06 53.5 52 48.1
Cc02_g18680 Coffea canephora HOM05D000838 ORTHO05D000656 8.5e-06 53.5 53 43.4
TPR.G24380 Trifolium pratense HOM05D000838 ORTHO05D000656 8.5e-06 53.5 52 50.0
TAR628G1072 Trochodendron aralioides HOM05D000838 ORTHO05D000656 8.5e-06 53.5 52 50.0
GSVIVG01031761001 Vitis vinifera HOM05D000838 ORTHO05D000656 8.5e-06 53.5 52 51.9


User provided reference genes

Program Settings