Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.3e-117 425.6 223 100.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 8.8e-77 290.8 226 67.3
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 3.7e-75 285.4 228 68.4
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 9.2e-74 280.8 226 64.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 2.0e-73 279.6 226 63.3
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.3e-72 276.9 233 65.7
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 5.0e-72 275.0 235 64.3
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 6.6e-72 274.6 223 64.1
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.9e-71 273.1 227 65.2
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 3.3e-71 272.3 226 63.3
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 4.3e-71 271.9 233 64.4
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 5.6e-71 271.6 236 62.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 7.3e-71 271.2 227 64.3
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.2e-70 270.4 170 83.5
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.1e-70 269.6 223 62.8
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.8e-70 269.2 226 63.3
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.6e-70 268.9 226 64.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 4.7e-70 268.5 229 65.1
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 8.0e-70 267.7 234 62.8
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.4e-69 266.9 201 68.7
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.8e-69 266.5 202 65.8
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.8e-69 266.5 177 74.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.3e-69 266.2 229 64.6
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 3.0e-69 265.8 217 65.0
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.2e-69 265.0 224 63.4
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 6.8e-69 264.6 219 65.3
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.2e-68 263.8 226 63.3
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.5e-68 263.5 226 64.2
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 2.0e-68 263.1 223 63.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 3.4e-68 262.3 227 63.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.4e-68 261.9 217 62.2
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.7e-68 261.5 202 64.4
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 5.7e-68 261.5 202 64.4
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 7.5e-68 261.2 229 62.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 9.8e-68 260.8 231 60.2
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.8e-68 260.8 220 65.9
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.3e-67 260.4 232 62.1
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.3e-67 260.4 222 63.1
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-67 260.0 217 61.3
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.2e-67 259.6 221 62.9
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.2e-67 259.6 223 60.5
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.2e-67 259.6 217 62.2
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 2.2e-67 259.6 223 61.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.2e-67 259.6 234 60.3
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.9e-67 259.2 217 63.1
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.9e-67 259.2 231 62.8
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.7e-67 258.8 219 62.1
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.9e-67 258.5 217 63.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 6.4e-67 258.1 224 62.1
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 6.4e-67 258.1 224 62.1
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.3e-67 257.7 217 62.7
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 8.3e-67 257.7 193 69.9
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.1e-66 257.3 223 60.1
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.1e-66 257.3 223 60.5
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.1e-66 257.3 218 61.9
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-66 256.9 217 62.7
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.2e-66 255.8 228 58.8
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 4.1e-66 255.4 220 63.6
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 5.4e-66 255.0 223 61.4
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.0e-65 253.1 225 61.8
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.0e-65 253.1 172 73.8
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 7.8e-65 251.1 201 64.7
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.0e-64 250.8 224 60.7
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 1.0e-64 250.8 239 58.6
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.7e-64 250.0 205 63.4
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.3e-64 249.6 225 58.2
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 8.6e-64 247.7 217 60.8
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.3e-63 245.7 217 62.7
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.1e-62 243.0 217 59.4
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 2.8e-62 242.7 220 58.6
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 6.2e-62 241.5 223 57.8
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 8.0e-62 241.1 208 62.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.0e-61 240.7 200 62.0
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.0e-61 240.7 218 58.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 6.8e-61 238.0 226 57.5
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.2e-60 237.3 199 60.3
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.4e-60 235.3 199 59.8
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.3e-59 233.8 212 59.4
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 3.7e-59 232.3 211 58.8
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 6.4e-59 231.5 176 64.2
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.1e-58 230.7 215 57.7
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.1e-58 230.7 207 59.9
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.1e-58 230.7 234 55.1
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.1e-58 230.7 234 55.1
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.4e-58 230.3 197 61.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 1.9e-58 229.9 175 64.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.2e-58 229.2 175 65.1
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-58 229.2 217 58.1
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.1e-58 228.8 176 64.2
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.1e-58 228.8 174 65.5
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.1e-58 228.8 174 65.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.1e-58 228.8 185 67.0
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 5.4e-58 228.4 174 65.5
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 5.4e-58 228.4 174 65.5
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 5.4e-58 228.4 174 65.5
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 5.4e-58 228.4 174 65.5
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 5.4e-58 228.4 146 78.8
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.2e-57 227.3 171 66.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.8e-57 224.6 185 66.5
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.7e-56 223.4 212 57.1
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 3.0e-56 222.6 205 60.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.3e-55 219.2 222 53.2
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.3e-55 219.2 222 53.2
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.3e-55 218.8 222 52.7
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 7.3e-55 218.0 152 73.0
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.1e-54 216.5 225 54.7
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.8e-54 216.1 157 68.2
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 2.8e-54 216.1 223 54.7
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.3e-53 213.0 157 67.5
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 5.2e-53 211.8 191 62.3
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.2e-52 210.7 171 60.2
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 4.4e-52 208.8 155 62.6
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 3.7e-51 205.7 155 67.7
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.9e-51 205.3 174 62.1
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 6.4e-51 204.9 155 64.5
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 9.2e-50 201.1 155 67.7
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.2e-49 200.7 156 66.7
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.7e-49 199.5 155 66.5
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 3.5e-49 199.1 178 55.1
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 3.9e-48 195.7 157 63.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.9e-47 193.4 137 70.1
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 2.5e-47 193.0 151 65.6
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 4.3e-47 192.2 156 60.3
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 4.3e-47 192.2 155 62.6
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.2e-46 190.7 145 66.2
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 6.2e-46 188.3 149 62.4
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.9e-45 184.5 125 75.2
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 8.9e-45 184.5 155 58.7
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 5.8e-44 181.8 171 55.0
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.1e-42 177.6 178 51.7
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.4e-42 176.4 180 52.2
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.1e-42 175.6 143 65.0
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 7.1e-42 174.9 206 46.6
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.2e-41 174.1 217 48.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.3e-40 170.6 118 72.0
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.3e-40 170.6 179 53.1
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.3e-40 170.6 179 53.1
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.1e-39 167.5 137 61.3
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.2e-35 153.3 105 72.4
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 6.4e-35 151.8 105 71.4
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.2e-33 147.5 180 46.7
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.7e-32 143.7 180 45.0
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.5e-31 140.6 108 65.7
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 2.5e-31 139.8 170 46.5
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.6e-30 136.0 156 45.5
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 5.1e-24 115.5 87 64.4
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.7e-19 100.5 157 41.4
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.2e-17 94.4 193 31.6
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.2e-10 69.3 108 44.4
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.2e-10 69.3 108 44.4
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.9e-08 62.8 81 49.4


User provided reference genes

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