Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 2.9e-35 151.4 78 100.0
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.6e-19 97.1 83 60.2
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.5e-18 95.9 83 60.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.5e-18 93.2 83 59.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.6e-17 91.3 78 64.1
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.3e-16 88.6 81 59.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.0e-16 88.2 86 57.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.0e-16 88.2 84 59.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 5.2e-16 87.4 90 52.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.0e-15 85.5 82 58.5
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-15 85.5 88 55.7
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.4e-15 84.7 82 53.7
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 4.4e-15 84.3 80 55.0
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 4.4e-15 84.3 82 57.3
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 5.7e-15 84.0 84 56.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 7.5e-15 83.6 79 57.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.8e-15 83.2 79 58.2
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 9.8e-15 83.2 70 62.9
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.3e-14 82.8 80 57.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.2e-14 82.0 85 54.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 2.2e-14 82.0 82 54.9
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.9e-14 81.6 76 57.9
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.7e-14 81.3 73 60.3
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 3.7e-14 81.3 82 58.5
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.9e-14 80.9 79 57.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.9e-14 80.9 90 52.2
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.3e-14 80.5 90 54.4
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 8.3e-14 80.1 76 56.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 59.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-13 79.7 75 57.3
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 92 52.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.4e-13 79.3 73 58.9
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.4e-13 79.3 73 58.9
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.4e-13 79.3 76 56.6
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.4e-13 79.3 83 56.6
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.4e-13 79.3 80 56.2
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.8e-13 79.0 79 54.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.8e-13 79.0 80 57.5
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.8e-13 79.0 88 52.3
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 2.4e-13 78.6 80 57.5
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.4e-13 78.6 73 57.5
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.4e-13 78.6 76 57.9
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.2e-13 78.2 79 51.9
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.1e-13 77.8 80 52.5
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 4.1e-13 77.8 80 57.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 53.8
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.4e-13 77.4 90 51.1
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 7.0e-13 77.0 80 53.8
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.2e-13 76.6 78 55.1
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 9.2e-13 76.6 82 54.9
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 51.9
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 83 55.4
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 1.6e-12 75.9 75 57.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 2.0e-12 75.5 80 55.0
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-12 75.5 79 55.7
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.0e-12 75.5 79 55.7
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.7e-12 75.1 84 57.1
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.7e-12 75.1 82 53.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 3.5e-12 74.7 81 54.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 3.5e-12 74.7 75 54.7
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 4.6e-12 74.3 82 53.7
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.6e-12 74.3 80 55.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 4.6e-12 74.3 79 54.4
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.6e-12 74.3 80 56.2
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.9e-12 73.9 83 51.8
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.9e-12 73.9 79 54.4
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.9e-12 73.9 90 48.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.9e-12 73.9 82 52.4
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.8e-12 73.6 78 55.1
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 7.8e-12 73.6 79 54.4
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.0e-11 73.2 75 56.0
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.0e-11 73.2 75 56.0
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.0e-11 73.2 83 50.6
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.0e-11 73.2 82 53.7
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.3e-11 72.8 82 51.2
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.3e-11 72.8 85 50.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.3e-11 72.8 85 49.4
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.3e-11 72.8 79 55.7
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.7e-11 72.4 80 53.8
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.7e-11 72.4 70 58.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.7e-11 72.4 82 53.7
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.9e-11 71.6 80 53.8
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.9e-11 71.6 79 49.4
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.9e-11 71.2 82 52.4
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.0e-11 70.9 81 51.9
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 5.0e-11 70.9 78 51.3
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.6e-11 70.5 79 50.6
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.6e-11 70.5 79 53.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 6.6e-11 70.5 77 53.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 8.6e-11 70.1 84 56.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.1e-10 69.7 80 52.5
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.1e-10 69.7 79 54.4
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-10 69.7 82 51.2
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-10 69.7 82 51.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-10 69.3 79 48.1
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.5e-10 68.6 77 48.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.5e-10 68.6 77 48.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.5e-10 68.6 82 51.2
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.5e-10 68.6 76 51.3
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 2.5e-10 68.6 84 45.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.3e-10 68.2 81 55.6
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.3e-10 68.2 81 50.6
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.3e-10 67.8 74 54.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.3e-10 67.8 82 51.2
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 4.3e-10 67.8 77 53.2
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 4.3e-10 67.8 88 47.7
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.6e-10 67.4 69 53.6
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 5.6e-10 67.4 78 53.8
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-10 67.4 78 53.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.6e-10 67.4 76 53.9
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.6e-10 67.4 83 47.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 9.5e-10 66.6 71 54.9
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.5e-10 66.6 74 52.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 9.5e-10 66.6 71 53.5
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.2e-09 66.2 74 52.7
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.2e-09 66.2 87 50.6
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.2e-09 66.2 72 56.9
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.2e-09 66.2 74 52.7
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.6e-09 65.9 96 41.7
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.1e-09 65.5 75 52.0
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.1e-09 65.5 73 53.4
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.1e-09 65.5 78 50.0
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.1e-09 65.5 78 50.0
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.8e-09 65.1 78 53.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.8e-09 65.1 79 46.8
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 3.6e-09 64.7 75 49.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 3.6e-09 64.7 78 47.4
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 3.6e-09 64.7 73 53.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 3.6e-09 64.7 73 53.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 3.6e-09 64.7 75 49.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.7e-09 64.3 71 49.3
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.7e-09 64.3 73 53.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.7e-09 64.3 77 49.4
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 4.7e-09 64.3 78 51.3
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 51.3
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-08 63.2 80 50.0
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 1.4e-08 62.8 44 63.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.4e-08 62.8 79 49.4
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.8e-08 62.4 73 50.7
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.3e-08 62.0 47 59.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.3e-08 62.0 76 48.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-08 62.0 78 50.0
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 3.1e-08 61.6 49 61.2
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-08 61.6 73 49.3
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.1e-08 61.6 49 61.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.0e-08 61.2 73 49.3
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.2e-08 60.8 75 52.0
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.9e-08 60.1 76 50.0
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 1.2e-07 59.7 53 50.9
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-07 59.3 71 46.5
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-07 59.3 71 50.7
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.5e-07 59.3 72 51.4
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.5e-07 59.3 75 42.7
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 2.6e-07 58.5 44 59.1
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.6e-07 58.5 71 45.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.6e-07 58.5 71 45.1
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 2.6e-07 58.5 73 47.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 3.4e-07 58.2 69 47.8
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 3.4e-07 58.2 69 47.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.4e-07 58.2 84 41.7
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.4e-07 57.8 77 50.6
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.8e-07 57.4 69 46.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 5.8e-07 57.4 81 43.2
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 5.8e-07 57.4 91 42.9
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.3e-06 56.2 74 51.4
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.2e-06 55.5 90 41.1
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.9e-06 55.1 39 66.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-06 55.1 93 43.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 3.7e-06 54.7 73 43.8


User provided reference genes

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