Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.1e-41 172.2 101 100.0
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.4e-21 105.5 92 66.3
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.4e-21 105.5 92 63.0
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.2e-20 103.2 91 65.9
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 2.0e-20 102.4 87 71.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 3.4e-20 101.7 97 62.9
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.4e-20 101.7 87 69.0
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.4e-20 101.7 87 69.0
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.5e-20 101.3 91 64.8
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.0e-19 100.1 92 64.1
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.9e-19 98.6 90 64.4
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-19 98.2 87 66.7
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.5e-19 97.4 89 64.0
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 6.5e-19 97.4 88 63.6
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.5e-19 97.4 90 63.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-18 96.3 91 65.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.5e-18 95.5 93 60.2
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.2e-18 95.1 89 65.2
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.2e-18 95.1 93 65.6
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 3.2e-18 95.1 89 66.3
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.2e-18 94.7 92 60.9
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.2e-18 94.7 92 63.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.2e-18 94.7 92 60.9
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.2e-18 94.0 91 63.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 7.2e-18 94.0 89 66.3
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 9.4e-18 93.6 91 64.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.2e-17 93.2 91 64.8
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.7e-17 92.0 86 64.0
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.7e-17 92.0 92 63.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.7e-17 92.0 96 63.5
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.6e-17 91.7 89 62.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.7e-17 91.3 91 60.4
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.7e-17 91.3 81 65.4
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 6.1e-17 90.9 92 59.8
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.0e-16 90.1 84 65.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.4e-16 89.7 94 61.7
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.4e-16 89.7 93 60.2
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.8e-16 89.4 92 59.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-16 89.4 89 61.8
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.3e-16 89.0 86 61.6
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 2.3e-16 89.0 92 58.7
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.0e-16 88.6 89 59.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 3.0e-16 88.6 87 63.2
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 3.0e-16 88.6 85 62.4
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 3.9e-16 88.2 86 61.6
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.9e-16 88.2 88 60.2
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.9e-16 88.2 89 60.7
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.1e-16 87.8 83 63.9
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 6.7e-16 87.4 80 65.0
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 6.7e-16 87.4 89 60.7
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.7e-16 87.4 86 62.8
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 8.8e-16 87.0 84 63.1
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.8e-16 87.0 84 63.1
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 8.8e-16 87.0 86 62.8
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.8e-16 87.0 92 58.7
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-15 86.7 85 60.0
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.1e-15 86.7 83 62.7
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.1e-15 86.7 83 66.3
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.5e-15 86.3 83 61.4
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.5e-15 86.3 99 53.5
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.5e-15 86.3 92 59.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.0e-15 85.9 90 56.7
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.0e-15 85.9 83 62.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 2.6e-15 85.5 85 62.4
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.3e-15 85.1 83 60.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.3e-15 85.1 92 56.5
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.3e-15 85.1 90 60.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.3e-15 85.1 83 63.9
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.3e-15 85.1 92 59.8
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 4.4e-15 84.7 88 58.0
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 4.4e-15 84.7 88 58.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.4e-15 84.7 83 63.9
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 7.4e-15 84.0 80 65.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.3e-14 83.2 81 60.5
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.3e-14 83.2 92 58.7
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.7e-14 82.8 83 61.4
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.7e-14 82.8 86 57.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.2e-14 82.4 92 59.8
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.8e-14 82.0 81 61.7
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.8e-14 82.0 86 57.0
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.8e-14 82.0 92 53.3
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.8e-14 82.0 79 62.0
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.7e-14 81.6 78 61.5
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 3.7e-14 81.6 67 67.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 4.8e-14 81.3 82 58.5
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.8e-14 81.3 67 71.6
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 8.2e-14 80.5 87 56.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 8.2e-14 80.5 91 57.1
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.1e-13 80.1 90 55.6
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.1e-13 80.1 83 59.0
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.4e-13 79.7 92 57.6
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.8e-13 79.3 74 60.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.8e-13 79.3 80 58.8
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.4e-13 79.0 90 55.6
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.1e-13 78.6 79 57.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.1e-13 78.2 77 59.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 4.1e-13 78.2 91 54.9
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 7.0e-13 77.4 61 70.5
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 7.0e-13 77.4 81 56.8
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.2e-12 76.6 90 52.2
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.6e-12 76.3 87 57.5
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.0e-12 75.9 93 54.8
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.0e-12 75.9 93 54.8
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.0e-12 75.9 83 57.8
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 2.6e-12 75.5 85 55.3
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 3.5e-12 75.1 92 55.4
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 3.5e-12 75.1 93 57.0
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 4.5e-12 74.7 90 53.3
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 4.5e-12 74.7 88 52.3
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.7e-12 73.9 77 58.4
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.0e-11 73.6 73 60.3
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.9e-11 72.0 75 57.3
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 3.8e-11 71.6 84 50.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.5e-11 70.9 60 70.0
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.1e-10 70.1 70 55.7
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.1e-10 70.1 81 55.6
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.5e-10 69.7 79 54.4
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.9e-10 69.3 79 55.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.9e-10 69.3 90 52.2
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 5.5e-10 67.8 92 47.8
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.2e-10 67.4 90 51.1
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.4e-10 67.0 90 50.0
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.2e-09 66.6 79 54.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.2e-09 66.6 79 54.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.7e-09 65.5 90 48.9
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 3.6e-09 65.1 83 53.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 4.7e-09 64.7 93 49.5
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.4e-08 63.2 70 54.3
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 2.3e-08 62.4 80 52.5
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 2.3e-08 62.4 88 47.7
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.0e-08 62.0 54 63.0
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 4.0e-08 61.6 95 47.4
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.7e-08 60.8 86 51.2
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 6.7e-08 60.8 77 49.4
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.8e-08 60.5 83 48.2
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 8.8e-08 60.5 80 55.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 8.8e-08 60.5 78 51.3
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.1e-07 60.1 78 47.4
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.1e-07 60.1 77 48.1
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.1e-07 60.1 73 50.7
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.5e-07 59.7 78 50.0
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.5e-07 59.7 77 48.1
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.0e-07 59.3 77 46.8
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 46.0
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.0e-07 59.3 90 46.7
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.0e-07 59.3 86 47.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.0e-07 59.3 87 44.8
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.6e-07 58.9 90 46.7
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 2.6e-07 58.9 91 45.1
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-07 58.9 95 44.2
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-07 58.9 91 45.1
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 2.6e-07 58.9 91 45.1
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 2.6e-07 58.9 95 44.2
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.6e-07 58.9 86 44.2
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 3.3e-07 58.5 92 45.7
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 4.4e-07 58.2 95 44.2
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 4.4e-07 58.2 75 50.7
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.4e-07 58.2 90 45.6
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 5.7e-07 57.8 91 44.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 5.7e-07 57.8 92 41.3
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 5.7e-07 57.8 91 44.0
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.7e-07 57.8 84 44.0
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 5.7e-07 57.8 58 63.8
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.7e-07 57.8 81 50.6
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 7.5e-07 57.4 92 45.7
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 9.7e-07 57.0 92 41.3
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 9.7e-07 57.0 92 41.3
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 9.7e-07 57.0 92 41.3
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 9.7e-07 57.0 77 45.5
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-06 56.6 77 48.1
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-06 56.6 82 46.3
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.2e-06 55.8 73 45.2
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.8e-06 55.5 88 46.6
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 2.8e-06 55.5 90 44.4
SEGI_32433 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 6.3e-06 54.3 84 42.9


User provided reference genes

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