Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 7.6e-255 883.2 423 100.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.1e-128 464.2 448 54.2
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 4.7e-127 458.8 447 55.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.8e-126 456.8 461 53.8
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 3.9e-126 455.7 437 53.8
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 7.0e-123 444.9 449 53.0
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 7.0e-123 444.9 437 52.9
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.5e-122 443.7 437 52.6
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.4e-122 442.6 430 53.3
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 7.7e-122 441.4 437 52.4
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.4e-120 437.2 431 52.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 4.2e-120 435.6 458 51.3
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.5e-120 435.3 442 52.5
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.5e-120 435.3 471 49.9
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 5.5e-120 435.3 448 52.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.2e-119 434.1 453 51.2
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.2e-119 434.1 482 49.6
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.6e-119 433.7 453 51.2
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.7e-119 433.0 461 50.1
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 3.6e-119 432.6 455 53.2
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.1e-119 431.8 455 51.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.3e-118 429.9 438 52.1
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 2.0e-117 426.8 478 49.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 2.6e-117 426.4 430 53.0
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.6e-117 426.4 452 50.7
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 4.4e-117 425.6 452 50.4
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 6.3e-116 421.8 447 49.9
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.3e-116 421.8 449 51.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 6.3e-116 421.8 449 51.9
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 8.2e-116 421.4 461 49.0
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 2.4e-115 419.9 403 54.8
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 7.0e-115 418.3 431 50.1
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.6e-114 416.4 431 50.8
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 4.5e-114 415.6 424 51.2
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 5.9e-114 415.2 458 48.7
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.3e-113 414.1 440 50.5
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 5.0e-113 412.1 428 53.0
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.0e-113 412.1 446 49.8
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 8.5e-113 411.4 432 48.4
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.9e-112 410.2 445 49.7
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 2.5e-112 409.8 430 50.5
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 3.2e-112 409.5 447 49.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 9.4e-112 407.9 446 49.3
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.2e-111 407.5 435 51.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 8.0e-111 404.8 442 49.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 8.0e-111 404.8 442 50.2
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-110 404.1 441 49.7
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.8e-110 403.7 456 49.3
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 5.2e-110 402.1 441 47.8
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.2e-110 402.1 426 49.5
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.0e-109 400.2 428 50.0
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 4.4e-109 399.1 420 52.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 9.7e-109 397.9 450 47.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.3e-108 397.5 427 50.4
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-108 397.1 428 50.2
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-108 397.1 428 50.2
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 2.2e-108 396.7 455 49.2
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.8e-108 395.6 464 46.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.1e-107 394.4 365 55.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.8e-107 393.7 429 47.8
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 5.3e-107 392.1 429 49.9
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 9.1e-107 391.3 425 48.7
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.6e-106 390.6 431 48.0
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.0e-106 390.2 351 56.1
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.5e-106 389.4 424 48.8
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.3e-105 387.5 425 49.6
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.7e-105 387.1 424 48.6
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.2e-105 386.7 444 47.1
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 5.0e-105 385.6 442 47.5
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 7.2e-104 381.7 418 48.1
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.7e-103 379.8 409 50.1
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.7e-103 379.8 426 48.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.7e-103 379.0 468 45.3
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.8e-102 377.1 427 47.3
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.6e-101 373.2 422 47.4
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.4e-101 372.9 417 46.3
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.7e-100 370.5 377 53.1
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.8e-100 369.0 349 53.6
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 8.3e-100 368.2 348 52.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.4e-99 367.5 420 49.0
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.2e-98 364.4 426 48.4
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.5e-98 362.8 344 53.2
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.9e-98 362.1 478 41.4
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.0e-97 359.0 344 52.0
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 8.9e-94 348.2 353 52.4
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 7.5e-93 345.1 436 45.9
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.2e-90 337.8 426 45.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.2e-90 337.8 435 44.8
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.0e-90 337.0 432 44.9
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 2.7e-90 336.7 434 45.6
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 3.8e-89 332.8 430 45.3
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 8.6e-89 331.6 428 46.3
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.5e-88 330.9 428 45.6
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 8.0e-87 325.1 427 45.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-86 324.3 302 56.3
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.1e-86 323.2 436 43.8
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.4e-85 319.3 435 45.1
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 9.5e-80 301.6 381 44.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.1e-78 298.1 518 37.6
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.4e-75 287.7 410 42.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-75 287.3 555 33.2
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.6e-74 282.7 305 50.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.8e-74 282.0 445 39.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.6e-71 274.2 430 42.6
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.8e-71 273.5 424 40.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.0e-69 267.3 358 44.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.7e-68 264.2 333 44.1
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 9.2e-67 258.5 429 35.4
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.1e-66 257.3 411 36.7
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.3e-65 254.6 324 44.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.9e-60 236.9 322 41.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 4.9e-60 236.1 263 47.1
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.0e-57 228.4 497 32.4
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.2e-55 219.2 584 28.4
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.1e-49 199.5 376 36.2
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 9.6e-48 195.3 323 38.7
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.6e-47 194.5 234 47.0
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.2e-45 188.3 155 56.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.2e-37 161.8 136 54.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-37 159.5 132 56.1
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-36 157.1 140 52.9
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 4.9e-36 156.4 176 47.7
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.3e-35 152.1 146 52.1
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-34 151.8 146 52.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 3.3e-32 143.7 268 37.7
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.3e-31 141.7 195 39.5
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.0e-25 122.1 100 59.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.9e-24 117.9 98 58.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-18 98.6 146 36.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.6e-18 98.2 153 40.5
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.9e-11 74.7 52 61.5
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 6.1e-10 69.7 57 61.4
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 6.1e-10 69.7 55 58.2
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 5.7e-08 63.2 35 80.0


User provided reference genes

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