Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 3.7e-51 204.5 100 100.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 4.6e-49 197.6 100 96.0
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 9.2e-42 173.3 99 86.9
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 8.6e-40 166.8 84 92.9
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 3.1e-29 131.7 99 62.6
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.0e-29 131.3 99 60.6
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 5.3e-29 131.0 99 62.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.3e-29 131.0 99 62.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 9.0e-29 130.2 99 61.6
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-28 129.4 99 58.6
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.5e-28 129.4 99 61.6
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-28 129.0 99 60.6
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.6e-28 128.6 99 61.6
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.6e-28 128.6 99 61.6
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.6e-28 128.6 99 61.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 4.4e-28 127.9 99 56.6
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 7.6e-28 127.1 99 59.6
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.3e-27 126.3 99 58.6
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.3e-27 126.3 99 60.6
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.7e-27 125.9 99 58.6
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.2e-27 125.6 99 61.6
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.2e-27 125.6 99 60.6
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.2e-27 125.6 99 59.6
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 3.8e-27 124.8 99 58.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.8e-27 124.8 99 60.6
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.8e-27 124.8 99 57.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 4.9e-27 124.4 99 58.6
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.4e-27 124.0 99 60.6
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 6.4e-27 124.0 99 58.6
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 6.4e-27 124.0 99 57.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 6.4e-27 124.0 99 59.6
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 8.4e-27 123.6 99 57.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 8.4e-27 123.6 99 58.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.1e-26 123.2 99 57.6
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.4e-26 122.9 99 58.6
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.4e-26 122.9 99 59.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.4e-26 122.9 99 58.6
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-26 122.9 99 56.6
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 58.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 59.6
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-26 122.5 99 59.6
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 2.4e-26 122.1 99 58.6
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.4e-26 122.1 97 56.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 2.4e-26 122.1 99 57.6
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.4e-26 122.1 99 57.6
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 2.4e-26 122.1 99 58.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 3.2e-26 121.7 99 59.6
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 3.2e-26 121.7 99 59.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.2e-26 121.7 99 59.6
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 4.2e-26 121.3 99 55.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.2e-26 121.3 99 55.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 4.2e-26 121.3 99 57.6
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 4.2e-26 121.3 99 56.6
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 4.2e-26 121.3 99 57.6
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.4e-26 120.9 99 56.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 5.4e-26 120.9 99 55.6
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 5.4e-26 120.9 99 57.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 5.4e-26 120.9 99 57.6
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 5.4e-26 120.9 99 55.6
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 7.1e-26 120.6 110 50.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 7.1e-26 120.6 99 56.6
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 9.3e-26 120.2 96 60.4
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 9.3e-26 120.2 96 60.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 55.6
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 57.6
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 58.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 55.6
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 54.5
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 58.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 9.3e-26 120.2 99 55.6
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.2e-25 119.8 99 55.6
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.2e-25 119.8 99 55.6
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.2e-25 119.8 113 54.0
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 55.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 54.5
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 54.5
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 55.6
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 56.6
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 56.6
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.6e-25 119.4 99 54.5
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.1e-25 119.0 99 52.5
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.7e-25 118.6 99 54.5
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-25 118.6 99 54.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.7e-25 118.6 99 54.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.6e-25 117.9 99 54.5
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 4.6e-25 117.9 98 56.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 4.6e-25 117.9 98 56.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 4.6e-25 117.9 99 55.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.6e-25 117.9 99 54.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 4.6e-25 117.9 99 56.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.6e-25 117.9 99 55.6
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.6e-25 117.9 100 58.0
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 6.0e-25 117.5 99 52.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 6.0e-25 117.5 119 51.3
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 56.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 55.6
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 55.6
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 55.6
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 55.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 7.8e-25 117.1 99 56.6
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.0e-24 116.7 99 54.5
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.3e-24 116.3 99 53.5
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.3e-24 116.3 99 53.5
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.7e-24 115.9 99 54.5
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.7e-24 115.9 99 55.6
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.7e-24 115.9 99 54.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.7e-24 115.9 99 54.5
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 2.3e-24 115.5 95 57.9
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.3e-24 115.5 99 54.5
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 2.3e-24 115.5 99 54.5
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.0e-24 115.2 99 54.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 3.9e-24 114.8 99 55.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 5.1e-24 114.4 99 54.5
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 6.6e-24 114.0 99 52.5
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 8.7e-24 113.6 99 53.5
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 8.7e-24 113.6 99 53.5
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-23 113.2 92 56.5
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-23 113.2 99 54.5
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.1e-23 113.2 99 54.5
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 3.3e-23 111.7 99 51.5
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 4.3e-23 111.3 99 54.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 4.3e-23 111.3 96 54.2
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.6e-23 110.9 116 46.6
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-22 109.8 76 61.8
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.6e-22 109.4 122 45.1
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.1e-22 109.0 99 51.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.8e-22 108.6 92 55.4
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.6e-22 108.2 83 54.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 4.8e-22 107.8 93 57.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 8.1e-22 107.1 99 48.5
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 3.1e-21 105.1 60 83.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 4.0e-21 104.8 99 51.5
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 4.0e-21 104.8 61 80.3
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.5e-20 102.8 99 48.5
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-18 96.3 99 44.4
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 5.1e-16 87.8 93 46.2
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.7e-16 87.4 99 40.4
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.5e-15 86.3 102 45.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.8e-14 82.0 89 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.2e-12 76.6 95 42.1
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.8e-12 74.3 54 61.1
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-11 73.2 99 40.4
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 2.9e-11 72.0 93 40.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.9e-11 72.0 73 45.2
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.9e-11 72.0 63 55.6
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.8e-11 71.6 95 38.9
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.2e-10 68.6 91 39.6
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 9.3e-10 67.0 74 40.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 2.1e-09 65.9 100 38.0
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.9e-09 63.9 86 33.7
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 2.8e-06 55.5 89 31.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 6.2e-06 54.3 70 41.4


User provided reference genes

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