Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 3.5e-86 321.6 165 100.0
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 7.3e-28 127.9 202 46.0
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.5e-25 118.6 178 47.2
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.6e-25 117.9 203 43.3
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.3e-24 117.1 207 40.6
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.3e-24 117.1 207 40.6
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 9.3e-23 110.9 155 49.7
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.1e-22 109.8 198 42.4
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 2.1e-22 109.8 207 43.0
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.6e-22 108.6 180 47.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 6.0e-22 108.2 204 41.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.3e-21 107.1 226 38.1
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.3e-21 107.1 159 48.4
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 2.3e-21 106.3 199 42.2
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 3.9e-21 105.5 201 41.8
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.1e-20 104.0 231 37.2
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.5e-20 103.6 206 43.2
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-20 103.6 199 43.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.9e-20 103.2 206 39.8
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.9e-20 103.2 200 42.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 5.6e-20 101.7 197 40.6
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 5.6e-20 101.7 190 42.1
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 7.4e-20 101.3 205 41.5
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 7.4e-20 101.3 207 40.1
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 7.4e-20 101.3 193 41.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 7.4e-20 101.3 206 41.7
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 7.4e-20 101.3 201 40.3
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 9.6e-20 100.9 205 40.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.3e-19 100.5 189 40.2
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 1.6e-19 100.1 163 42.3
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 2.1e-19 99.8 208 37.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 2.8e-19 99.4 203 40.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 2.8e-19 99.4 209 41.1
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.8e-19 98.6 200 41.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.1e-18 97.4 199 42.2
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-18 97.4 212 37.7
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.4e-18 97.1 208 37.0
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.4e-18 97.1 206 38.8
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 3.1e-18 95.9 199 40.7
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 4.0e-18 95.5 213 38.0
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.3e-18 95.1 200 39.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.2e-17 94.0 204 38.7
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.5e-17 93.6 203 40.4
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.0e-17 93.2 206 37.9
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.6e-17 92.8 206 40.3
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 4.5e-17 92.0 215 35.3
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 4.5e-17 92.0 204 37.3
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.8e-17 91.7 202 38.1
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 9.9e-17 90.9 205 39.5
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 9.9e-17 90.9 204 36.8
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.3e-16 90.5 205 39.5
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.7e-16 90.1 207 39.1
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.7e-16 90.1 181 44.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.2e-16 89.7 197 39.1
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.8e-16 89.0 202 38.6
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 4.9e-16 88.6 205 37.1
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 8.4e-16 87.8 208 39.9
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.9e-15 86.7 167 38.9
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-15 86.3 193 36.3
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.4e-15 86.3 204 38.2
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 2.4e-15 86.3 216 37.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.2e-15 85.9 169 38.5
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.2e-15 85.9 169 38.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 4.2e-15 85.5 193 36.3
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 4.2e-15 85.5 193 36.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.5e-15 85.1 214 34.1
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 7.1e-15 84.7 205 35.6
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 9.3e-15 84.3 216 38.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 1.2e-14 84.0 174 40.8
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.2e-14 84.0 208 35.6
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.6e-14 83.6 202 36.6
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-14 83.6 202 38.1
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.1e-14 83.2 177 38.4
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.7e-14 82.8 191 36.1
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.5e-14 82.4 215 35.8
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.6e-14 82.0 200 37.0
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 7.9e-14 81.3 178 38.8
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 7.9e-14 81.3 203 36.0
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.0e-13 80.9 95 52.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 1.8e-13 80.1 211 36.0
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.8e-13 80.1 142 40.8
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 2.3e-13 79.7 210 35.2
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.0e-13 79.3 158 36.7
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.0e-13 79.3 203 35.0
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.9e-13 79.0 154 40.9
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.1e-13 78.6 204 34.3
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.7e-13 78.2 215 36.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.7e-13 77.8 185 37.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.5e-12 77.0 179 39.1
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 2.5e-12 76.3 204 33.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.5e-12 76.3 189 37.6
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.3e-12 75.9 175 37.7
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.3e-12 75.9 195 37.4
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 9.6e-12 74.3 201 34.8
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.1e-11 73.2 210 37.1
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.1e-11 73.2 97 46.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 2.8e-11 72.8 210 31.9
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.8e-11 72.0 192 34.4
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.1e-10 70.9 175 39.4
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-10 70.9 193 35.8
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.1e-10 70.9 176 37.5
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.4e-10 70.5 214 32.2
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-10 70.5 208 33.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-10 70.1 193 34.7
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-10 69.7 213 36.2
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.4e-10 69.7 216 34.3
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.1e-10 69.3 219 33.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-10 69.3 200 34.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 3.1e-10 69.3 218 33.0
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 3.1e-10 69.3 109 41.3
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 5.3e-10 68.6 205 33.7
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 5.3e-10 68.6 97 43.3
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 6.9e-10 68.2 205 35.6
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 6.9e-10 68.2 202 34.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 9.0e-10 67.8 191 35.1
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 9.0e-10 67.8 197 35.0
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.2e-09 67.4 198 32.3
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.2e-09 67.4 97 46.4
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.2e-09 67.4 200 33.0
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.0e-09 66.6 63 66.7
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.6e-09 66.2 212 32.5
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 2.6e-09 66.2 165 37.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 2.6e-09 66.2 162 37.0
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 3.4e-09 65.9 200 33.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.4e-09 65.9 169 35.5
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.4e-09 65.9 207 33.3
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 4.5e-09 65.5 196 32.1
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-09 65.5 200 32.5
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 4.5e-09 65.5 200 32.5
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.8e-09 65.1 218 35.3
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-09 65.1 200 33.5
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-09 65.1 200 33.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 5.8e-09 65.1 98 45.9
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 7.6e-09 64.7 171 36.3
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.6e-09 64.7 133 37.6
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.0e-08 64.3 202 33.7
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.0e-08 64.3 220 35.0
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.0e-08 64.3 176 37.5
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-08 63.9 152 32.2
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.3e-08 63.9 209 34.4
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.3e-08 63.9 147 37.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-08 63.9 209 32.1
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-08 63.5 154 32.5
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 2.2e-08 63.2 209 31.6
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.8e-08 62.4 189 32.3
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.8e-08 62.4 182 34.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-07 60.5 169 31.4
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-07 60.5 191 30.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-07 59.3 155 30.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.2e-07 59.3 169 30.8
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 3.2e-07 59.3 155 30.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 3.2e-07 59.3 133 33.1
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 5.5e-07 58.5 84 42.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.5e-06 55.8 141 31.2
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 3.5e-06 55.8 144 31.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.6e-06 55.5 144 33.3
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 4.6e-06 55.5 196 30.1
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.6e-06 55.5 168 33.9
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.0e-06 55.1 111 41.4


User provided reference genes

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