Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010334 Daucus carota HOM05D001558 ORTHO05D003061 5.6e-33 143.7 72 100.0
Lj1A257T27 Lonicera japonica HOM05D001558 ORTHO05D003061 4.3e-25 117.5 62 90.3
Lsat_1_v5_gn_2_59301 Lactuca sativa HOM05D001558 ORTHO05D003061 7.4e-25 116.7 62 88.7
HanXRQChr14g0438011 Helianthus annuus HOM05D001558 ORTHO05D003061 1.3e-24 115.9 62 88.7
ECA238G0305 Erigeron canadensis HOM05D001558 ORTHO05D003061 1.6e-24 115.5 62 87.1
CSS0001627 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 1.8e-23 112.1 62 85.5
CSS0031917 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 1.8e-23 112.1 62 85.5
CSS0037903 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 1.8e-23 112.1 62 85.5
Oeu031469.1 Olea europaea HOM05D001558 ORTHO05D003061 1.5e-22 109.0 64 84.4
Migut.N02477 Erythranthe guttata HOM05D001558 ORTHO05D003061 4.5e-22 107.5 64 84.4
Hma1.2p1_0587F.1_g184000 Hydrangea macrophylla HOM05D001558 ORTHO05D003061 4.5e-22 107.5 62 87.1
vmacro03326 Vaccinium macrocarpon HOM05D001558 ORTHO05D003061 7.6e-22 106.7 62 83.9
Actinidia07255 Actinidia chinensis HOM05D001558 ORTHO05D003061 1.3e-21 105.9 62 77.4
Rhsim13G0113300 Rhododendron simsii HOM05D001558 ORTHO05D003061 1.7e-21 105.5 62 83.9
MSTRG.12376 Avicennia marina HOM05D001558 ORTHO05D003061 2.2e-21 105.1 64 81.2
TWI75G0591 Tripterygium wilfordii HOM05D001558 ORTHO05D003061 2.2e-21 105.1 62 85.5
GSVIVG01036086001 Vitis vinifera HOM05D001558 ORTHO05D003061 2.2e-21 105.1 64 81.2
Actinidia24226 Actinidia chinensis HOM05D001558 ORTHO05D003061 2.9e-21 104.8 62 79.0
Actinidia25114 Actinidia chinensis HOM05D001558 ORTHO05D003061 2.9e-21 104.8 62 79.0
Peaxi162Scf00224g00119 Petunia axillaris HOM05D001558 ORTHO05D003061 2.5e-20 101.7 64 79.7
Solyc11g068650.2 Solanum lycopersicum HOM05D001558 ORTHO05D003061 2.5e-20 101.7 64 78.1
Sopen11g027370 Solanum pennellii HOM05D001558 ORTHO05D003061 2.5e-20 101.7 64 78.1
Nitab4.5_0000731g0050 Nicotiana tabacum HOM05D001558 ORTHO05D003061 3.2e-20 101.3 64 79.7
Nitab4.5_0008177g0010 Nicotiana tabacum HOM05D001558 ORTHO05D003061 3.2e-20 101.3 64 79.7
CAN.G745.8 Capsicum annuum HOM05D001558 ORTHO05D003061 4.2e-20 100.9 64 78.1
Cpa.g.sc195.17 Carica papaya HOM05D001558 ORTHO05D003061 7.1e-20 100.1 62 75.8
Gohir.D07G114700 Gossypium hirsutum HOM05D001558 ORTHO05D003061 7.1e-20 100.1 62 80.6
Gorai.001G122900 Gossypium raimondii HOM05D001558 ORTHO05D003061 7.1e-20 100.1 62 80.6
RcHm_v2.0_Chr5g0046541 Rosa chinensis HOM05D001558 ORTHO05D003061 9.3e-20 99.8 62 75.8
Sc21g0006990 Simmondsia chinensis HOM05D001558 ORTHO05D003061 9.3e-20 99.8 62 77.4
Gohir.A07G110900 Gossypium hirsutum HOM05D001558 ORTHO05D003061 1.2e-19 99.4 62 79.0
Oeu035572.1 Olea europaea HOM05D001558 ORTHO05D003061 1.6e-19 99.0 56 89.3
Potri.004G197000 Populus trichocarpa HOM05D001558 ORTHO05D003061 1.6e-19 99.0 62 79.0
Prupe.6G135200 Prunus persica HOM05D001558 ORTHO05D003061 1.6e-19 99.0 62 75.8
Hund18771 Selenicereus undatus HOM05D001558 ORTHO05D003061 2.1e-19 98.6 62 75.8
TAR623G0898 Trochodendron aralioides HOM05D001558 ORTHO05D003061 2.1e-19 98.6 62 75.8
EL10Ac7g16332 Beta vulgaris HOM05D001558 ORTHO05D003061 2.7e-19 98.2 62 75.8
COL.COLO4_34012 Corchorus olitorius HOM05D001558 ORTHO05D003061 2.7e-19 98.2 62 75.8
THA.LOC104810924 Tarenaya hassleriana HOM05D001558 ORTHO05D003061 2.7e-19 98.2 62 74.2
Duzib170G1075 Durio zibethinus HOM05D001558 ORTHO05D003061 3.5e-19 97.8 62 75.8
MD03G1149300 Malus domestica HOM05D001558 ORTHO05D003061 3.5e-19 97.8 62 74.2
CANSAT54G1061 Cannabis sativa HOM05D001558 ORTHO05D003061 6.1e-19 97.1 65 78.5
FvH4_3g25550 Fragaria vesca HOM05D001558 ORTHO05D003061 6.1e-19 97.1 62 75.8
FAN11G0115 Fragaria x ananassa HOM05D001558 ORTHO05D003061 6.1e-19 97.1 62 75.8
AUR62029824 Chenopodium quinoa HOM05D001558 ORTHO05D003061 7.9e-19 96.7 62 74.2
FAN16G2794 Fragaria x ananassa HOM05D001558 ORTHO05D003061 7.9e-19 96.7 62 74.2
Thecc.09G279400 Theobroma cacao HOM05D001558 ORTHO05D003061 7.9e-19 96.7 62 75.8
Duzib150G1636 Durio zibethinus HOM05D001558 ORTHO05D003061 1.0e-18 96.3 62 75.8
Eucgr.B03829 Eucalyptus grandis HOM05D001558 ORTHO05D003061 1.3e-18 95.9 62 75.8
FAN25G0112 Fragaria x ananassa HOM05D001558 ORTHO05D003061 2.3e-18 95.1 62 74.2
Sabra09G0125100 Salix brachista HOM05D001558 ORTHO05D003061 2.3e-18 95.1 62 74.2
Ah.08g223510 Amaranthus hybridus HOM05D001558 ORTHO05D003061 3.0e-18 94.7 62 72.6
Aqoxy2G01060 Aquilegia oxysepala HOM05D001558 ORTHO05D003061 3.0e-18 94.7 62 74.2
PGR102G2335 Punica granatum HOM05D001558 ORTHO05D003061 3.0e-18 94.7 62 74.2
SGA_v2.0_scaffold10G05236 Striga asiatica HOM05D001558 ORTHO05D003061 5.1e-18 94.0 64 75.0
AUR62006468 Chenopodium quinoa HOM05D001558 ORTHO05D003061 8.7e-18 93.2 62 71.0
Potri.009G159900 Populus trichocarpa HOM05D001558 ORTHO05D003061 1.5e-17 92.4 62 72.6
Manes.11G163800 Manihot esculenta HOM05D001558 ORTHO05D003061 1.9e-17 92.0 62 72.6
Ciclev10028505m.g Citrus clementina HOM05D001558 ORTHO05D003061 2.5e-17 91.7 62 72.6
FAN21G2859 Fragaria x ananassa HOM05D001558 ORTHO05D003061 3.3e-17 91.3 62 71.0
MD11G1168100 Malus domestica HOM05D001558 ORTHO05D003061 3.3e-17 91.3 62 71.0
unitig_8.g2975 Utricularia gibba HOM05D001558 ORTHO05D005302 7.4e-17 90.1 61 72.1
Ca_19441_v3 Cicer arietinum L. HOM05D001558 ORTHO05D003061 1.3e-16 89.4 63 68.3
CiPaw.14G098300 Carya illinoinensis HOM05D001558 ORTHO05D003061 1.6e-16 89.0 63 71.4
PSO339G4265 Papaver somniferum HOM05D001558 ORTHO05D003061 1.6e-16 89.0 62 72.6
PSO801G0143 Papaver somniferum HOM05D001558 ORTHO05D003061 1.6e-16 89.0 62 72.6
ClCG10G018720 Citrullus lanatus HOM05D001558 ORTHO05D003061 2.2e-16 88.6 62 66.1
Glyma.12G186400 Glycine max HOM05D001558 ORTHO05D003061 2.2e-16 88.6 63 65.1
Cfa016647 Carpinus fangiana HOM05D001558 ORTHO05D003061 2.8e-16 88.2 62 71.0
Nn6g34810 Nelumbo nucifera HOM05D001558 ORTHO05D003061 3.7e-16 87.8 62 69.4
Phvul.005G122300 Phaseolus vulgaris HOM05D001558 ORTHO05D003061 3.7e-16 87.8 63 63.5
Glyma.11G181700 Glycine max HOM05D001558 ORTHO05D003061 8.2e-16 86.7 63 66.7
Glyma.12G091500 Glycine max HOM05D001558 ORTHO05D003061 8.2e-16 86.7 63 68.3
MELO3C009494.2 Cucumis melo HOM05D001558 ORTHO05D003061 1.1e-15 86.3 62 66.1
TPR.G15433 Trifolium pratense HOM05D001558 ORTHO05D003061 1.1e-15 86.3 63 63.5
Cc01_g08870 Coffea canephora HOM05D001558 ORTHO05D003061 1.4e-15 85.9 68 69.1
CsaV3_3G037510 Cucumis sativus L. HOM05D001558 ORTHO05D003061 1.4e-15 85.9 62 66.1
Medtr4g052540 Medicago truncatula HOM05D001558 ORTHO05D003061 1.4e-15 85.9 63 65.1
Lalb_Chr03g0028201 Lupinus albus HOM05D001558 ORTHO05D003061 1.8e-15 85.5 63 66.7
Psat7g142320 Pisum sativum HOM05D001558 ORTHO05D003061 1.8e-15 85.5 63 65.1
Aa31LG1G13180 Aethionema arabicum HOM05D001558 ORTHO05D003061 2.4e-15 85.1 63 69.8
ATR0820G255 Amborella trichopoda HOM05D001558 ORTHO05D003061 2.4e-15 85.1 62 67.7
HPP92_023061 Vanilla planifolia HOM05D001558 ORTHO05D003061 2.4e-15 85.1 62 64.5
Phvul.011G095900 Phaseolus vulgaris HOM05D001558 ORTHO05D003061 3.1e-15 84.7 63 65.1
Lj3g0014791 Lotus japonicus HOM05D001558 ORTHO05D003061 4.1e-15 84.3 63 63.5
AT5G22350 Arabidopsis thaliana HOM05D001558 ORTHO05D003061 5.3e-15 84.0 63 68.3
Haze_19653 Corylus avellana HOM05D001558 ORTHO05D003061 5.3e-15 84.0 62 67.7
Glyma.13G315100 Glycine max HOM05D001558 ORTHO05D003061 5.3e-15 84.0 63 61.9
CARHR191190 Cardamine hirsuta HOM05D001558 ORTHO05D003061 9.0e-15 83.2 63 68.3
VMungo1127G1610 Vigna mungo HOM05D001558 ORTHO05D003061 9.0e-15 83.2 63 65.1
DCAR_012211 Daucus carota HOM05D001558 ORTHO05D003061 1.2e-14 82.8 62 69.4
Carub.0006s2009 Capsella rubella HOM05D001558 ORTHO05D003061 2.0e-14 82.0 63 66.7
Thhalv10013630m.g Eutrema salsugineum HOM05D001558 ORTHO05D003061 2.0e-14 82.0 63 66.7
Lalb_Chr24g0393521 Lupinus albus HOM05D001558 ORTHO05D003061 2.0e-14 82.0 63 60.3
Sed0004798 Sechium edule HOM05D001558 ORTHO05D003061 2.0e-14 82.0 62 67.7
AL6G33370 Arabidopsis lyrata HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
BcaB05g22732 Brassica carinata HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
BcaC03g13876 Brassica carinata HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
BNapus_Darmor_BZH_scaffold_38p00720 Brassica napus HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
BolC2t07151H Brassica oleracea HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
BraA02t05653Z Brassica rapa HOM05D001558 ORTHO05D003061 2.6e-14 81.6 63 66.7
ClCG01G011870 Citrullus lanatus HOM05D001558 ORTHO05D003061 2.6e-14 81.6 62 67.7
QL01p011896 Quercus lobata HOM05D001558 ORTHO05D003061 2.6e-14 81.6 65 64.6
CsaV3_1G015020 Cucumis sativus L. HOM05D001558 ORTHO05D003061 3.4e-14 81.3 62 66.1
CsaV3_1G015930 Cucumis sativus L. HOM05D001558 ORTHO05D003061 3.4e-14 81.3 62 66.1
arahy.Tifrunner.gnm1.ann1.2IR9C4 Arachis hypogaea HOM05D001558 ORTHO05D003061 5.9e-14 80.5 63 58.7
arahy.Tifrunner.gnm1.ann1.Q5DPKW Arachis hypogaea HOM05D001558 ORTHO05D003061 5.9e-14 80.5 63 58.7
CiPaw.09G017300 Carya illinoinensis HOM05D001558 ORTHO05D003061 5.9e-14 80.5 62 64.5
QL07p038133 Quercus lobata HOM05D001558 ORTHO05D003061 7.7e-14 80.1 63 66.7
Sed0000974 Sechium edule HOM05D001558 ORTHO05D003061 7.7e-14 80.1 62 62.9
Cfa009991 Carpinus fangiana HOM05D001558 ORTHO05D003061 1.0e-13 79.7 65 69.2
Haze_23352 Corylus avellana HOM05D001558 ORTHO05D003061 1.0e-13 79.7 65 69.2
SEGI_37149 Sequoiadendron giganteum HOM05D001558 ORTHO05D003061 1.0e-13 79.7 62 66.1
Atru.chr8.1443 Acer truncatum HOM05D001558 ORTHO05D003061 1.7e-13 79.0 62 64.5
BcaB08g36438 Brassica carinata HOM05D001558 ORTHO05D003061 1.7e-13 79.0 63 65.1
Sp6g22890 Schrenkiella parvula HOM05D001558 ORTHO05D003061 1.7e-13 79.0 63 65.1
Cpa.g.sc104.92 Carica papaya HOM05D001558 ORTHO05D003061 2.2e-13 78.6 62 64.5
BolC9t58298H Brassica oleracea HOM05D001558 ORTHO05D003061 3.8e-13 77.8 64 60.9
BcaC04g19567 Brassica carinata HOM05D001558 ORTHO05D003061 5.0e-13 77.4 63 61.9
A10p18480 Brassica napus HOM05D001558 ORTHO05D003061 5.0e-13 77.4 63 61.9
C09p54230 Brassica napus HOM05D001558 ORTHO05D003061 5.0e-13 77.4 63 61.9
C09p54300 Brassica napus HOM05D001558 ORTHO05D003061 5.0e-13 77.4 63 61.9
MELO3C004681.2 Cucumis melo HOM05D001558 ORTHO05D003061 6.5e-13 77.0 62 64.5
BraA10t43928Z Brassica rapa HOM05D001558 ORTHO05D003061 4.2e-12 74.3 63 60.3
Duzib093G2141 Durio zibethinus HOM05D001558 ORTHO05D003061 5.5e-12 73.9 62 56.5
CDE06G2666 Ceratophyllum demersum HOM05D001558 ORTHO05D003061 9.4e-12 73.2 62 61.3
Gohir.D04G084400 Gossypium hirsutum HOM05D001558 ORTHO05D003061 9.4e-12 73.2 62 56.5
Gorai.009G399700 Gossypium raimondii HOM05D001558 ORTHO05D003061 9.4e-12 73.2 62 56.5
Ciclev10013428m.g Citrus clementina HOM05D001558 ORTHO05D003061 1.6e-11 72.4 65 56.9
COL.COLO4_29670 Corchorus olitorius HOM05D001558 ORTHO05D003061 2.1e-11 72.0 56 60.7
PGR142G3251 Punica granatum HOM05D001558 ORTHO05D003061 2.7e-11 71.6 62 61.3
Os02g0535700 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D003061 6.1e-11 70.5 64 56.2
GSVIVG01033893001 Vitis vinifera HOM05D001558 ORTHO05D003061 6.1e-11 70.5 47 70.2
Gohir.A04G059300 Gossypium hirsutum HOM05D001558 ORTHO05D003061 7.9e-11 70.1 62 54.8
CANSAT64G2255 Cannabis sativa HOM05D001558 ORTHO05D003061 1.4e-10 69.3 65 56.9
Zm00001eb181500 Zea mays HOM05D001558 ORTHO05D003061 1.8e-10 68.9 65 53.8
Pp3c23_3410 Physcomitrium patens HOM05D001558 ORTHO05D003061 2.3e-10 68.6 62 56.5
Mapoly0038s0050 Marchantia polymorpha HOM05D001558 ORTHO05D003061 3.9e-10 67.8 62 54.8
SMO196G0287 Selaginella moellendorffii HOM05D001558 ORTHO05D003061 5.1e-10 67.4 63 54.0
Pp3c20_13230 Physcomitrium patens HOM05D001558 ORTHO05D003061 8.8e-10 66.6 62 54.8
AagrBONN_evm.TU.Sc2ySwM_369.385 Anthoceros agrestis HOM05D001558 ORTHO05D003061 1.1e-09 66.2 62 51.6
Manes.09G052051 Manihot esculenta HOM05D001558 ORTHO05D003061 1.1e-09 66.2 62 58.1
HanXRQChr09g0266141 Helianthus annuus HOM05D001558 ORTHO05D003061 2.5e-09 65.1 51 62.7
CSS0015105 Camellia sinensis var. sinensis HOM05D001558 ORTHO05D003061 4.3e-09 64.3 62 54.8
arahy.Tifrunner.gnm1.ann1.8Z285S Arachis hypogaea HOM05D001558 ORTHO05D003061 7.4e-09 63.5 62 56.5
FAN02G4308 Fragaria x ananassa HOM05D001558 ORTHO05D003061 7.4e-09 63.5 50 54.0
arahy.Tifrunner.gnm1.ann1.ESQ7GJ Arachis hypogaea HOM05D001558 ORTHO05D003061 2.2e-08 62.0 62 56.5
FAN05G2759 Fragaria x ananassa HOM05D001558 ORTHO05D003061 3.7e-08 61.2 50 56.0
CBR_g33922 Chara braunii HOM05D001558 ORTHO05D003061 4.8e-08 60.8 46 60.9
FAN14G1517 Fragaria x ananassa HOM05D001558 ORTHO05D003061 6.3e-08 60.5 44 59.1
RcHm_v2.0_Chr3g0474821 Rosa chinensis HOM05D001558 ORTHO05D003061 8.2e-08 60.1 44 56.8
Atru.chr3.3176 Acer truncatum HOM05D001558 ORTHO05D003061 1.1e-07 59.7 34 82.4
Thhalv10013667m.g Eutrema salsugineum HOM05D001558 ORTHO05D003061 1.1e-07 59.7 59 42.4
Thecc.05G095600 Theobroma cacao HOM05D001558 ORTHO05D003061 1.8e-07 58.9 62 50.0
Prupe.7G101400 Prunus persica HOM05D001558 ORTHO05D003061 2.4e-07 58.5 46 63.0
FAN05G3343 Fragaria x ananassa HOM05D001558 ORTHO05D003061 3.1e-07 58.2 50 54.0
A10p30260 Brassica napus HOM05D001558 ORTHO05D003061 4.1e-07 57.8 59 42.4
FAN09G1626 Fragaria x ananassa HOM05D001558 ORTHO05D003061 4.1e-07 57.8 41 63.4
Potri.016G075500 Populus trichocarpa HOM05D001558 ORTHO05D003061 4.1e-07 57.8 43 60.5
BraA10t45064Z Brassica rapa HOM05D001558 ORTHO05D003061 6.9e-07 57.0 59 44.1
Dinv31718 Davidia involucrata HOM05D001558 ORTHO05D005808 6.9e-07 57.0 53 58.5
Dinv31721 Davidia involucrata HOM05D001558 ORTHO05D003061 6.9e-07 57.0 53 58.5
BcaC06g32588 Brassica carinata HOM05D001558 ORTHO05D003061 9.1e-07 56.6 59 44.1
MD14G1031500 Malus domestica HOM05D001558 ORTHO05D003061 9.1e-07 56.6 46 60.9
Os04g0414000 Oryza sativa ssp. japonica HOM05D001558 ORTHO05D003061 9.1e-07 56.6 51 52.9
Sabra16G0078000 Salix brachista HOM05D001558 ORTHO05D003061 9.1e-07 56.6 47 55.3
Actinidia31259 Actinidia chinensis HOM05D001558 ORTHO05D003061 1.2e-06 56.2 62 51.6
AL6G16190 Arabidopsis lyrata HOM05D001558 ORTHO05D003061 2.0e-06 55.5 59 40.7
Carub.0006s0506 Capsella rubella HOM05D001558 ORTHO05D003061 2.0e-06 55.5 55 41.8
Lalb_Chr20g0111581 Lupinus albus HOM05D001558 ORTHO05D003061 3.4e-06 54.7 62 48.4
C09p70670 Brassica napus HOM05D001558 ORTHO05D003061 5.9e-06 53.9 59 40.7
HanXRQChr16g0516951 Helianthus annuus HOM05D001558 ORTHO05D003061 7.7e-06 53.5 38 57.9
Phvul.001G192500 Phaseolus vulgaris HOM05D001558 ORTHO05D003061 7.7e-06 53.5 46 54.3
SGA_v2.0_scaffold35G14039 Striga asiatica HOM05D001558 ORTHO05D003061 7.7e-06 53.5 37 70.3


User provided reference genes

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