Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010305 Daucus carota HOM05D001246 ORTHO05D175605 7.4e-36 153.3 75 100.0
DCAR_012479 Daucus carota HOM05D001246 ORTHO05D005436 6.5e-16 87.0 92 56.5
Cc01_g19430 Coffea canephora HOM05D001246 ORTHO05D005436 5.7e-12 73.9 91 49.5
Cpa.g.sc52.39 Carica papaya HOM05D001246 ORTHO05D005436 2.8e-11 71.6 96 47.9
Migut.D00300 Erythranthe guttata HOM05D001246 ORTHO05D005436 6.3e-11 70.5 91 48.4
Potri.005G210100 Populus trichocarpa HOM05D001246 ORTHO05D005436 6.3e-11 70.5 91 49.5
Gohir.D12G004500 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.1e-10 69.7 91 49.5
Gorai.008G004400 Gossypium raimondii HOM05D001246 ORTHO05D005436 1.1e-10 69.7 91 49.5
Actinidia00756 Actinidia chinensis HOM05D001246 ORTHO05D005436 1.8e-10 68.9 92 48.9
FAN15G0387 Fragaria x ananassa HOM05D001246 ORTHO05D005436 1.8e-10 68.9 95 47.4
Glyma.10G026800 Glycine max HOM05D001246 ORTHO05D005436 1.8e-10 68.9 91 49.5
Manes.05G076900 Manihot esculenta HOM05D001246 ORTHO05D005436 1.8e-10 68.9 98 49.0
PGSC0003DMG400012878 Solanum tuberosum HOM05D001246 ORTHO05D005436 1.8e-10 68.9 92 47.8
Aa31LG10G17030 Aethionema arabicum HOM05D001246 ORTHO05D005436 2.4e-10 68.6 97 44.3
FvH4_2g23520 Fragaria vesca HOM05D001246 ORTHO05D005436 2.4e-10 68.6 91 48.4
FAN24G1059 Fragaria x ananassa HOM05D001246 ORTHO05D005436 2.4e-10 68.6 91 48.4
Sabra05G0160200 Salix brachista HOM05D001246 ORTHO05D005436 2.4e-10 68.6 91 48.4
Solyc09g065240.3 Solanum lycopersicum HOM05D001246 ORTHO05D005436 2.4e-10 68.6 93 47.3
Sopen09g026960 Solanum pennellii HOM05D001246 ORTHO05D005436 2.4e-10 68.6 93 47.3
PSO832G2660 Papaver somniferum HOM05D001246 ORTHO05D005436 3.1e-10 68.2 87 47.1
Rhsim13G0025300 Rhododendron simsii HOM05D001246 ORTHO05D005436 3.1e-10 68.2 94 48.9
RcHm_v2.0_Chr6g0290991 Rosa chinensis HOM05D001246 ORTHO05D005436 3.1e-10 68.2 95 47.4
GSVIVG01001146001 Vitis vinifera HOM05D001246 ORTHO05D005436 3.1e-10 68.2 93 48.4
FAN20G0917 Fragaria x ananassa HOM05D001246 ORTHO05D005436 4.1e-10 67.8 95 46.3
Gohir.A12G004900 Gossypium hirsutum HOM05D001246 ORTHO05D005436 4.1e-10 67.8 91 48.4
Prupe.8G240600 Prunus persica HOM05D001246 ORTHO05D005436 4.1e-10 67.8 96 49.0
TAR636G1576 Trochodendron aralioides HOM05D001246 ORTHO05D005436 4.1e-10 67.8 92 47.8
Ca_09755_v3 Cicer arietinum L. HOM05D001246 ORTHO05D005436 5.3e-10 67.4 95 48.4
Dinv32931 Davidia involucrata HOM05D001246 ORTHO05D005436 5.3e-10 67.4 92 46.7
Nitab4.5_0001228g0010 Nicotiana tabacum HOM05D001246 ORTHO05D005436 5.3e-10 67.4 93 47.3
Psat6g060240 Pisum sativum HOM05D001246 ORTHO05D005436 5.3e-10 67.4 95 49.5
VMungo0720G2994 Vigna mungo HOM05D001246 ORTHO05D005436 5.3e-10 67.4 92 50.0
Lsat_1_v5_gn_9_3620 Lactuca sativa HOM05D001246 ORTHO05D005436 7.0e-10 67.0 93 48.4
Peaxi162Scf00641g00065 Petunia axillaris HOM05D001246 ORTHO05D005436 7.0e-10 67.0 93 47.3
SalBow4G0961 Salvia bowleyana HOM05D001246 ORTHO05D005436 7.0e-10 67.0 91 48.4
CARHR291740 Cardamine hirsuta HOM05D001246 ORTHO05D005436 9.1e-10 66.6 97 43.3
Hma1.2p1_0822F.1_g224520 Hydrangea macrophylla HOM05D001246 ORTHO05D005436 9.1e-10 66.6 91 48.4
Oeu037563.1 Olea europaea HOM05D001246 ORTHO05D005436 9.1e-10 66.6 91 49.5
AL5G46050 Arabidopsis lyrata HOM05D001246 ORTHO05D005436 1.2e-09 66.2 91 45.1
AT3G63200 Arabidopsis thaliana HOM05D001246 ORTHO05D005436 1.2e-09 66.2 91 45.1
BolC8t51369H Brassica oleracea HOM05D001246 ORTHO05D005436 1.2e-09 66.2 102 43.1
Glyma.02G147100 Glycine max HOM05D001246 ORTHO05D005436 1.2e-09 66.2 91 48.4
Nitab4.5_0000458g0080 Nicotiana tabacum HOM05D001246 ORTHO05D005436 1.2e-09 66.2 92 46.7
THA.LOC104823046 Tarenaya hassleriana HOM05D001246 ORTHO05D005436 1.2e-09 66.2 92 47.8
CANSAT25G0266 Cannabis sativa HOM05D001246 ORTHO05D005436 1.6e-09 65.9 96 45.8
ClCG09G007070 Citrullus lanatus HOM05D001246 ORTHO05D005436 1.6e-09 65.9 87 46.0
MELO3C015831.2 Cucumis melo HOM05D001246 ORTHO05D005436 1.6e-09 65.9 87 46.0
CsaV3_7G028100 Cucumis sativus L. HOM05D001246 ORTHO05D005436 1.6e-09 65.9 87 46.0
Duzib138G0504 Durio zibethinus HOM05D001246 ORTHO05D005436 1.6e-09 65.9 89 46.1
Gohir.D11G128200 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.6e-09 65.9 93 48.4
Gorai.007G137100 Gossypium raimondii HOM05D001246 ORTHO05D005436 1.6e-09 65.9 93 48.4
SGA_v2.0_scaffold81G26008 Striga asiatica HOM05D001246 ORTHO05D005436 1.6e-09 65.9 91 49.5
Ciclev10020528m.g Citrus clementina HOM05D001246 ORTHO05D005436 2.0e-09 65.5 95 46.3
DCAR_002730 Daucus carota HOM05D001246 ORTHO05D005436 2.0e-09 65.5 91 46.2
Thecc.01G278700 Theobroma cacao HOM05D001246 ORTHO05D005436 2.0e-09 65.5 97 47.4
TWI59G1017 Tripterygium wilfordii HOM05D001246 ORTHO05D005436 2.0e-09 65.5 90 46.7
Migut.N02051 Erythranthe guttata HOM05D001246 ORTHO05D005436 2.7e-09 65.1 92 50.0
Medtr1g072190 Medicago truncatula HOM05D001246 ORTHO05D005436 2.7e-09 65.1 91 47.3
QL12p021694 Quercus lobata HOM05D001246 ORTHO05D005436 2.7e-09 65.1 91 50.5
Sp5g00330 Schrenkiella parvula HOM05D001246 ORTHO05D005436 2.7e-09 65.1 94 43.6
Sc24g0002760 Simmondsia chinensis HOM05D001246 ORTHO05D005436 2.7e-09 65.1 91 42.9
MSTRG.21557 Avicennia marina HOM05D001246 ORTHO05D005436 3.5e-09 64.7 92 44.6
BcaC07g42704 Brassica carinata HOM05D001246 ORTHO05D005436 3.5e-09 64.7 98 43.9
CSS0000251 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D005436 3.5e-09 64.7 97 46.4
CSS0032226 Camellia sinensis var. sinensis HOM05D001246 ORTHO05D005436 3.5e-09 64.7 97 46.4
Cfa006145 Carpinus fangiana HOM05D001246 ORTHO05D005436 3.5e-09 64.7 97 44.3
HanXRQChr15g0466701 Helianthus annuus HOM05D001246 ORTHO05D005436 3.5e-09 64.7 92 46.7
Lj5g0011033 Lotus japonicus HOM05D001246 ORTHO05D005436 3.5e-09 64.7 92 50.0
Phvul.007G172300 Phaseolus vulgaris HOM05D001246 ORTHO05D005436 3.5e-09 64.7 91 47.3
Ah.08g215980 Amaranthus hybridus HOM05D001246 ORTHO05D005436 4.5e-09 64.3 82 42.7
BcaC07g40799 Brassica carinata HOM05D001246 ORTHO05D005436 4.5e-09 64.3 98 43.9
A09p55000 Brassica napus HOM05D001246 ORTHO05D005436 4.5e-09 64.3 98 42.9
C08p37910 Brassica napus HOM05D001246 ORTHO05D005436 4.5e-09 64.3 98 43.9
Haze_04705 Corylus avellana HOM05D001246 ORTHO05D005436 4.5e-09 64.3 96 45.8
MD03G1264100 Malus domestica HOM05D001246 ORTHO05D005436 4.5e-09 64.3 96 47.9
Potri.002G052600 Populus trichocarpa HOM05D001246 ORTHO05D005436 4.5e-09 64.3 89 42.7
Sabra02G0042700 Salix brachista HOM05D001246 ORTHO05D005436 4.5e-09 64.3 89 43.8
SalBow6G1081 Salvia bowleyana HOM05D001246 ORTHO05D005436 4.5e-09 64.3 89 44.9
FAN27G3051 Fragaria x ananassa HOM05D001246 ORTHO05D005436 5.9e-09 63.9 93 44.1
Nn1g02252 Nelumbo nucifera HOM05D001246 ORTHO05D005436 5.9e-09 63.9 92 47.8
Sed0011782 Sechium edule HOM05D001246 ORTHO05D005436 5.9e-09 63.9 87 46.0
vmacro02575 Vaccinium macrocarpon HOM05D001246 ORTHO05D005436 5.9e-09 63.9 93 48.4
EL10Ac7g15789 Beta vulgaris HOM05D001246 ORTHO05D005436 7.7e-09 63.5 82 43.9
Gohir.D08G204100 Gossypium hirsutum HOM05D001246 ORTHO05D005436 7.7e-09 63.5 93 46.2
Gorai.004G216100 Gossypium raimondii HOM05D001246 ORTHO05D005436 7.7e-09 63.5 93 46.2
TWI14G0447 Tripterygium wilfordii HOM05D001246 ORTHO05D005436 7.7e-09 63.5 91 45.1
MD11G1284700 Malus domestica HOM05D001246 ORTHO05D005436 1.0e-08 63.2 96 46.9
Actinidia09136 Actinidia chinensis HOM05D001246 ORTHO05D005436 1.3e-08 62.8 92 46.7
Lalb_Chr06g0162981 Lupinus albus HOM05D001246 ORTHO05D005436 1.3e-08 62.8 91 45.1
AUR62039245 Chenopodium quinoa HOM05D001246 ORTHO05D005436 1.7e-08 62.4 82 43.9
Actinidia24892 Actinidia chinensis HOM05D001246 ORTHO05D005436 2.2e-08 62.0 90 42.2
MSTRG.17444 Avicennia marina HOM05D001246 ORTHO05D005436 2.2e-08 62.0 91 48.4
AUR62009797 Chenopodium quinoa HOM05D001246 ORTHO05D005436 2.2e-08 62.0 82 42.7
Thhalv10006027m.g Eutrema salsugineum HOM05D001246 ORTHO05D005436 2.2e-08 62.0 97 41.2
Manes.01G207400 Manihot esculenta HOM05D001246 ORTHO05D005436 2.2e-08 62.0 84 46.4
Duzib133G1407 Durio zibethinus HOM05D001246 ORTHO05D005436 2.9e-08 61.6 97 46.4
Lj2A1172T33 Lonicera japonica HOM05D001246 ORTHO05D005436 2.9e-08 61.6 93 47.3
Nitab4.5_0009953g0010 Nicotiana tabacum HOM05D001246 ORTHO05D005436 2.9e-08 61.6 90 45.6
TAR362G0525 Trochodendron aralioides HOM05D001246 ORTHO05D005436 2.9e-08 61.6 91 44.0
Gohir.A11G122900 Gossypium hirsutum HOM05D001246 ORTHO05D005436 3.8e-08 61.2 97 45.4
COL.COLO4_09089 Corchorus olitorius HOM05D001246 ORTHO05D005436 5.0e-08 60.8 98 46.9
Actinidia21115 Actinidia chinensis HOM05D001246 ORTHO05D005436 6.5e-08 60.5 89 43.8
BraA09t40909Z Brassica rapa HOM05D001246 ORTHO05D005436 6.5e-08 60.5 87 42.5
ECA247G1219 Erigeron canadensis HOM05D001246 ORTHO05D005436 6.5e-08 60.5 87 41.4
Carub.0005s2987 Capsella rubella HOM05D001246 ORTHO05D005436 1.1e-07 59.7 91 44.0
Gohir.A08G186000 Gossypium hirsutum HOM05D001246 ORTHO05D005436 1.1e-07 59.7 93 44.1
THA.LOC104802232 Tarenaya hassleriana HOM05D001246 ORTHO05D005436 1.1e-07 59.7 91 44.0
CiPaw.08G105400 Carya illinoinensis HOM05D001246 ORTHO05D005436 1.5e-07 59.3 97 45.4
Eucgr.H01476 Eucalyptus grandis HOM05D001246 ORTHO05D005436 1.5e-07 59.3 96 46.9
Nitab4.5_0000759g0150 Nicotiana tabacum HOM05D001246 ORTHO05D005436 1.5e-07 59.3 90 44.4
PGR119G1337 Punica granatum HOM05D001246 ORTHO05D005436 1.5e-07 59.3 93 48.4
Sed0026307 Sechium edule HOM05D001246 ORTHO05D005436 1.5e-07 59.3 87 44.8
VMungo1383G3165 Vigna mungo HOM05D001246 ORTHO05D005436 1.5e-07 59.3 78 47.4
C04p30010 Brassica napus HOM05D001246 ORTHO05D005436 1.9e-07 58.9 97 41.2
Glyma.19G156700 Glycine max HOM05D001246 ORTHO05D005436 1.9e-07 58.9 78 47.4
Lj1A46T44 Lonicera japonica HOM05D001246 ORTHO05D005436 1.9e-07 58.9 90 44.4
Lj1g0002717 Lotus japonicus HOM05D001246 ORTHO05D005436 1.9e-07 58.9 78 46.2
Peaxi162Scf00783g00224 Petunia axillaris HOM05D001246 ORTHO05D005436 1.9e-07 58.9 88 45.5
BcaB02g08076 Brassica carinata HOM05D001246 ORTHO05D005436 2.5e-07 58.5 94 40.4
A04p00210 Brassica napus HOM05D001246 ORTHO05D005436 2.5e-07 58.5 94 40.4
BraA04t15740Z Brassica rapa HOM05D001246 ORTHO05D005436 2.5e-07 58.5 94 40.4
SGA_v2.0_scaffold1G00482 Striga asiatica HOM05D001246 ORTHO05D005436 2.5e-07 58.5 91 48.4
Aqoxy5G00498 Aquilegia oxysepala HOM05D001246 ORTHO05D005436 3.2e-07 58.2 85 45.9
Phvul.001G151400 Phaseolus vulgaris HOM05D001246 ORTHO05D005436 3.2e-07 58.2 78 47.4
BcaC02g10344 Brassica carinata HOM05D001246 ORTHO05D005436 4.2e-07 57.8 97 40.2
BolC4t24534H Brassica oleracea HOM05D001246 ORTHO05D005436 4.2e-07 57.8 97 40.2
vmacro14919 Vaccinium macrocarpon HOM05D001246 ORTHO05D005436 4.2e-07 57.8 88 45.5
Glyma.03G154200 Glycine max HOM05D001246 ORTHO05D005436 9.4e-07 56.6 78 46.2
Hund20867 Selenicereus undatus HOM05D001246 ORTHO05D005436 1.2e-06 56.2 95 45.3
arahy.Tifrunner.gnm1.ann1.5U4S75 Arachis hypogaea HOM05D001246 ORTHO05D005436 2.1e-06 55.5 96 41.7
arahy.Tifrunner.gnm1.ann1.MNS73A Arachis hypogaea HOM05D001246 ORTHO05D005436 2.1e-06 55.5 96 41.7
Ca_08600_v3 Cicer arietinum L. HOM05D001246 ORTHO05D005436 2.1e-06 55.5 84 42.9
Dinv34757 Davidia involucrata HOM05D001246 ORTHO05D005436 2.1e-06 55.5 84 42.9
Oeu009200.1 Olea europaea HOM05D001246 ORTHO05D005436 2.1e-06 55.5 86 40.7
arahy.Tifrunner.gnm1.ann1.D7XM6E Arachis hypogaea HOM05D001246 ORTHO05D005436 4.7e-06 54.3 78 44.9
arahy.Tifrunner.gnm1.ann1.HLIX3I Arachis hypogaea HOM05D001246 ORTHO05D005436 4.7e-06 54.3 78 44.9
Hund18736 Selenicereus undatus HOM05D001246 ORTHO05D005436 6.1e-06 53.9 96 39.6


User provided reference genes

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