Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 2.6e-308 1061.2 544 100.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 4.8e-177 625.2 534 62.4
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 8.0e-172 607.8 534 61.8
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.6e-164 582.4 535 59.4
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.0e-162 576.6 538 58.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.2e-159 567.4 538 57.6
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.0e-159 566.6 538 57.4
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.9e-159 565.1 538 58.4
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 3.6e-156 555.8 539 57.0
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 4.7e-156 555.4 544 55.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 5.2e-155 552.0 541 56.6
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 1.5e-154 550.4 543 55.6
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.5e-154 550.4 528 57.0
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.3e-153 547.4 545 55.4
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.4e-152 543.1 544 54.2
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.4e-152 542.0 529 58.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.2e-151 540.8 539 54.9
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 3.5e-151 539.3 531 55.4
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 5.6e-149 531.9 534 55.1
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 7.3e-149 531.6 543 56.5
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 6.1e-148 528.5 546 55.5
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.5e-146 523.9 535 54.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 3.4e-146 522.7 530 54.2
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 5.8e-146 521.9 533 53.7
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 7.5e-146 521.5 542 54.1
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.7e-145 519.2 438 62.3
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 4.9e-145 518.8 547 54.8
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 6.4e-145 518.5 505 57.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 7.0e-144 515.0 538 53.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.7e-143 513.1 536 55.0
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 3.5e-143 512.7 575 50.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.0e-142 511.1 541 54.3
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 2.5e-141 506.5 535 52.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.6e-140 503.8 535 52.1
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 3.6e-140 502.7 531 52.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 3.6e-140 502.7 534 52.6
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 6.2e-140 501.9 532 53.8
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.8e-139 500.4 531 53.5
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.3e-139 500.0 538 53.2
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 5.2e-139 498.8 536 53.0
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 8.9e-139 498.0 532 53.0
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-138 497.3 534 53.2
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.0e-138 496.9 535 53.6
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.4e-138 496.1 532 52.8
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.7e-137 492.7 680 45.9
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.9e-137 492.3 552 52.0
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 6.4e-137 491.9 532 54.1
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.4e-136 490.7 548 52.9
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 9.2e-136 488.0 561 49.9
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 1.2e-135 487.6 544 52.8
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.6e-134 481.9 546 52.0
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.6e-132 477.2 549 50.3
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 2.1e-132 476.9 530 51.9
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.1e-131 474.6 545 50.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.0e-131 472.6 519 52.6
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 2.0e-130 470.3 529 51.6
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.0e-130 470.3 529 51.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.3e-129 467.6 529 51.4
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.7e-129 467.2 543 51.0
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 6.4e-129 465.3 534 52.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 8.3e-129 464.9 530 50.0
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 9.2e-128 461.5 529 50.5
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.6e-127 460.7 527 51.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 2.1e-127 460.3 531 51.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 2.7e-127 459.9 528 52.1
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 3.5e-127 459.5 586 47.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.0e-126 458.0 516 52.1
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.3e-126 457.6 532 50.4
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 2.3e-126 456.8 536 49.1
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 7.3e-125 451.8 469 53.1
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.2e-122 444.5 531 49.7
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.5e-122 444.1 476 51.7
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.0e-122 443.7 528 50.2
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 6.4e-121 438.7 479 50.5
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 8.4e-121 438.3 531 49.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.1e-119 433.7 528 50.2
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.7e-119 433.3 531 48.4
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 3.0e-118 429.9 531 48.4
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 9.6e-117 424.9 531 48.4
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.6e-116 424.1 533 47.3
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.6e-116 424.1 533 47.3
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.8e-116 423.3 533 47.3
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.1e-115 421.4 533 46.9
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.8e-115 420.6 528 47.3
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 2.4e-115 420.2 387 56.6
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 4.0e-115 419.5 535 47.3
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 6.9e-115 418.7 535 47.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.5e-114 417.5 534 46.3
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.4e-112 410.2 563 44.9
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 5.4e-112 409.1 464 50.6
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 3.5e-111 406.4 536 46.1
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 3.0e-110 403.3 518 47.3
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 5.8e-106 389.0 349 57.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.8e-102 377.5 544 41.9
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.3e-99 365.9 555 42.5
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 8.7e-94 348.6 529 42.3
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 5.7e-93 345.9 379 53.8
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 2.7e-87 327.0 531 41.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 4.3e-85 319.7 365 48.8
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.6e-84 317.8 322 54.3
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.8e-76 290.4 548 36.3
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 4.8e-76 289.7 523 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 6.3e-76 289.3 531 36.2
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 3.1e-75 287.0 422 41.0
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.1e-75 286.6 375 48.3
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.0e-70 270.4 384 44.3
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.5e-69 268.1 281 54.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.4e-69 265.8 322 48.1
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.3e-68 265.0 416 38.2
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.0e-62 245.4 275 49.8
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.8e-62 244.6 200 60.0
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.3e-62 244.2 285 50.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 3.5e-58 230.3 340 45.0
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.7e-57 228.0 166 66.9
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.8e-57 226.9 260 47.3
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.1e-56 225.3 409 36.9
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.3e-52 211.8 157 66.2
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.4e-51 207.6 266 47.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.2e-48 196.8 158 62.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.2e-44 184.5 196 51.0
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 6.3e-44 183.0 259 45.2
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.5e-40 171.8 196 47.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.0e-38 165.6 124 70.2
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.4e-37 160.6 165 53.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.8e-31 141.0 116 61.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.7e-28 130.6 136 53.7
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 4.1e-27 127.1 266 37.6
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.2e-18 99.0 229 36.2
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 7.8e-18 96.3 284 32.7
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 8.6e-17 92.8 155 45.2
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.0e-13 81.6 97 49.5
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-09 68.9 93 44.1
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-09 68.9 93 44.1
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.5e-08 64.7 94 42.6
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 3.6e-07 60.8 176 34.7


User provided reference genes

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