Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010154 Daucus carota HOM05D000539 ORTHO05D000233 0.0e+00 1409.0 779 100.0
DCAR_029832 Daucus carota HOM05D000539 ORTHO05D000233 8.1e-69 266.2 291 50.5
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 2.2e-53 214.9 688 30.1
RcHm_v2.0_Chr2g0145261 Rosa chinensis HOM05D000539 ORTHO05D000233 3.7e-53 214.2 634 30.8
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 3.7e-53 214.2 652 31.0
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 9.1e-52 209.5 699 29.8
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 3.4e-51 207.6 635 30.2
RcHm_v2.0_Chr4g0417051 Rosa chinensis HOM05D000539 ORTHO05D000233 7.2e-49 199.9 662 29.2
DCAR_031512 Daucus carota HOM05D000539 ORTHO05D000592 1.1e-38 166.0 199 43.7
RcHm_v2.0_Chr3g0460901 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-33 149.1 210 40.0
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 5.5e-33 147.1 206 40.3
RcHm_v2.0_Chr7g0211271 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-31 142.9 232 37.5
RcHm_v2.0_Chr4g0424111 Rosa chinensis HOM05D000539 ORTHO05D000592 5.0e-26 124.0 165 40.6
RcHm_v2.0_Chr1g0352301 Rosa chinensis HOM05D000539 ORTHO05D000233 1.3e-21 109.4 105 51.4
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 5.9e-19 100.5 519 27.0
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 5.5e-17 94.0 545 21.8
DCAR_005077 Daucus carota HOM05D055054 ORTHO05D000592 1.2e-16 92.8 112 42.0
RcHm_v2.0_Chr7g0228371 Rosa chinensis HOM05D000539 ORTHO05D000233 3.6e-16 91.3 123 41.5
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 1.0e-15 89.7 504 21.6
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 1.5e-14 85.9 485 22.5
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-14 85.9 466 28.3
RcHm_v2.0_Chr1g0342101 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-14 85.9 127 39.4
RcHm_v2.0_Chr4g0391901 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-14 85.9 127 39.4
RcHm_v2.0_Chr3g0494441 Rosa chinensis HOM05D000539 ORTHO05D000233 5.7e-14 84.0 62 59.7
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-13 81.6 153 36.6
FvH4_4g08651 Fragaria vesca HOM05D000539 ORTHO05D000233 3.7e-13 81.3 147 34.0
FAN07G0889 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-13 81.3 147 34.7
DCAR_031226 Daucus carota HOM05D000539 ORTHO05D000592 4.9e-13 80.9 106 42.5
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 4.9e-13 80.9 130 33.8
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 4.9e-13 80.9 128 38.3
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 1.4e-12 79.3 466 27.9
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.1e-12 77.8 162 32.1
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.4e-12 77.4 129 36.4
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 5.4e-12 77.4 135 37.0
RcHm_v2.0_Chr5g0066151 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-11 75.9 121 39.7
HanXRQChr10g0317551 Helianthus annuus HOM05D000616 ORTHO05D000233 2.0e-11 75.5 145 35.9
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 5.9e-11 73.9 577 21.3
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.8e-11 73.6 132 32.6
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.8e-11 73.6 134 35.1
HanXRQChr14g0441971 Helianthus annuus HOM05D000107 ORTHO05D000062 7.8e-11 73.6 145 35.2
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 7.8e-11 73.6 157 33.8
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 7.8e-11 73.6 127 33.9
RcHm_v2.0_Chr3g0494431 Rosa chinensis HOM05D000539 ORTHO05D010294 1.0e-10 73.2 93 41.9
FvH4_7g02602 Fragaria vesca HOM05D000539 ORTHO05D000233 1.3e-10 72.8 140 30.0
RcHm_v2.0_Chr2g0160871 Rosa chinensis HOM05D000539 ORTHO05D000592 1.3e-10 72.8 65 50.8
FvH4_3g14361 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-10 72.4 140 30.7
RcHm_v2.0_Chr6g0250691 Rosa chinensis HOM05D000539 ORTHO05D000592 1.7e-10 72.4 81 43.2
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 2.3e-10 72.0 154 32.5
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 2.3e-10 72.0 127 34.6
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-10 72.0 130 35.4
MELO3C028363.2 Cucumis melo HOM05D000539 ORTHO05D000233 6.6e-10 70.5 135 32.6
FAN18G1469 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.6e-10 70.5 178 32.6
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 8.6e-10 70.1 131 33.6
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 8.6e-10 70.1 139 33.1
FAN02G4302 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.6e-10 70.1 122 34.4
FAN24G3557 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.6e-10 70.1 167 32.9
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 8.6e-10 70.1 143 35.0
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-09 69.3 156 33.3
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-09 69.3 130 34.6
RcHm_v2.0_Chr2g0132431 Rosa chinensis HOM05D000539 ORTHO05D000233 1.9e-09 68.9 149 32.2
FAN06G1168 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.5e-09 68.6 134 32.1
RcHm_v2.0_Chr2g0160781 Rosa chinensis HOM05D000539 ORTHO05D010294 2.5e-09 68.6 92 39.1
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 2.5e-09 68.6 148 33.8
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 2.5e-09 68.6 144 33.3
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 3.3e-09 68.2 144 33.3
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 4.3e-09 67.8 100 35.0
RcHm_v2.0_Chr6g0267111 Rosa chinensis HOM05D000539 ORTHO05D000233 4.3e-09 67.8 109 35.8
SHI11199 Sapria himalayana HOM05D000616 ORTHO05D000233 4.3e-09 67.8 130 33.8
SHI42042 Sapria himalayana HOM05D000616 ORTHO05D000233 4.3e-09 67.8 153 30.7
FAN04G3167 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.6e-09 67.4 135 28.1
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 5.6e-09 67.4 154 31.2
SHI25574 Sapria himalayana HOM05D000616 ORTHO05D000233 5.6e-09 67.4 123 35.0
FAN01G1775 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.3e-09 67.0 135 31.9
FAN11G1867 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.3e-09 67.0 140 32.9
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 7.3e-09 67.0 156 33.3
RcHm_v2.0_Chr5g0035911 Rosa chinensis HOM05D000539 ORTHO05D000592 7.3e-09 67.0 61 49.2
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 9.5e-09 66.6 156 32.7
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 1.2e-08 66.2 144 31.9
FAN07G2711 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.2e-08 66.2 89 37.1
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.2e-08 66.2 573 20.9
RcHm_v2.0_Chr7g0242811 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-08 66.2 65 44.6
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 2.1e-08 65.5 574 21.1
Prupe.1G193900 Prunus persica HOM05D000539 ORTHO05D000592 2.1e-08 65.5 185 23.8
FvH4_4g04601 Fragaria vesca HOM05D000539 ORTHO05D000233 2.8e-08 65.1 60 41.7
SHI18457 Sapria himalayana HOM05D000616 ORTHO05D000233 2.8e-08 65.1 142 32.4
Sed0011713 Sechium edule HOM05D000539 ORTHO05D000233 3.6e-08 64.7 132 31.8
Sed0009359 Sechium edule HOM05D000107 ORTHO05D000062 4.7e-08 64.3 131 32.8
SHI08770 Sapria himalayana HOM05D000616 ORTHO05D000233 6.1e-08 63.9 143 31.5
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 8.0e-08 63.5 398 26.1
SHI44094 Sapria himalayana HOM05D000616 ORTHO05D000233 8.0e-08 63.5 144 32.6
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 1.0e-07 63.2 183 31.7
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.0e-07 63.2 175 29.1
FAN20G0456 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.0e-07 63.2 120 33.3
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 1.4e-07 62.8 128 36.7
FvH4_2g04948 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-07 62.8 138 31.9
FvH4_7g02152 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-07 62.8 132 31.8
MELO3C027955.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.3e-07 62.0 100 33.0
FAN02G2878 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-07 62.0 59 39.0
FAN03G1033 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-07 62.0 169 27.2
FAN16G1830 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-07 62.0 169 27.2
Prupe.8G059600 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-07 62.0 195 24.1
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.0e-07 61.6 154 31.8
HanXRQChr05g0158771 Helianthus annuus HOM05D008452 ORTHO05D010294 3.0e-07 61.6 128 28.9
HanXRQChr13g0403311 Helianthus annuus HOM05D008452 ORTHO05D000233 3.0e-07 61.6 128 28.9
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.0e-07 61.2 99 35.4
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.0e-07 61.2 148 27.0
Prupe.1G183700 Prunus persica HOM05D000539 ORTHO05D000592 4.0e-07 61.2 193 22.3
SHI23684 Sapria himalayana HOM05D000616 ORTHO05D000233 4.0e-07 61.2 129 33.3
Prupe.4G261200 Prunus persica HOM05D000539 ORTHO05D000592 5.2e-07 60.8 194 23.2
RcHm_v2.0_Chr3g0462471 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-07 60.8 61 45.9
RcHm_v2.0_Chr5g0082411 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-07 60.8 61 45.9
SHI09962 Sapria himalayana HOM05D000616 ORTHO05D000233 5.2e-07 60.8 141 31.2
SHI13009 Sapria himalayana HOM05D000616 ORTHO05D000233 5.2e-07 60.8 140 30.7
MELO3C031353.2 Cucumis melo HOM05D000539 ORTHO05D000233 6.8e-07 60.5 100 33.0
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 6.8e-07 60.5 143 34.3
HanXRQChr03g0077561 Helianthus annuus HOM05D008452 ORTHO05D010294 6.8e-07 60.5 128 28.1
HanXRQChr09g0253291 Helianthus annuus HOM05D008452 ORTHO05D000233 6.8e-07 60.5 128 28.1
HanXRQChr11g0349201 Helianthus annuus HOM05D008452 ORTHO05D010294 6.8e-07 60.5 128 28.1
HanXRQChr17g0547341 Helianthus annuus HOM05D008452 ORTHO05D010294 6.8e-07 60.5 128 28.1
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.2e-06 59.7 160 33.1
SHI24087 Sapria himalayana HOM05D000616 ORTHO05D000233 1.2e-06 59.7 126 31.7
SHI49305 Sapria himalayana HOM05D000616 ORTHO05D000233 1.2e-06 59.7 114 33.3
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.5e-06 59.3 128 35.9
CsaV3_5G017000 Cucumis sativus L. HOM05D000539 ORTHO05D000233 1.5e-06 59.3 99 33.3
FAN09G3363 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.5e-06 59.3 159 30.8
FAN24G0297 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.5e-06 59.3 115 33.0
SHI14247 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-06 59.3 137 32.1
HanXRQChr09g0262921 Helianthus annuus HOM05D000539 ORTHO05D000233 2.0e-06 58.9 102 36.3
SHI23185 Sapria himalayana HOM05D000616 ORTHO05D000233 2.6e-06 58.5 144 29.9
SHI09564 Sapria himalayana HOM05D000616 ORTHO05D000233 3.4e-06 58.2 143 30.1
SHI26225 Sapria himalayana HOM05D000616 ORTHO05D000233 3.4e-06 58.2 143 29.4
SHI20507 Sapria himalayana HOM05D000616 ORTHO05D000233 4.4e-06 57.8 135 31.1
FAN24G0424 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.7e-06 57.4 56 42.9
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 5.7e-06 57.4 203 27.6
Prupe.7G026800 Prunus persica HOM05D000539 ORTHO05D000592 5.7e-06 57.4 81 35.8
SHI34223 Sapria himalayana HOM05D000616 ORTHO05D000233 5.7e-06 57.4 143 30.1
MELO3C029675.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.5e-06 57.0 185 29.2
SHI00757 Sapria himalayana HOM05D000616 ORTHO05D000233 7.5e-06 57.0 129 31.0
DCAR_011485 Daucus carota HOM05D000539 ORTHO05D000233 9.8e-06 56.6 54 59.3
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 9.8e-06 56.6 208 24.5
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.8e-06 56.6 161 27.3


User provided reference genes

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