Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_010153 Daucus carota HOM05D024847 ORTHO05D000385 3.3e-109 398.7 204 100.0
DCAR_031829 Daucus carota HOM05D024847 ORTHO05D000385 1.7e-73 280.0 266 59.0
DCAR_015813 Daucus carota HOM05D024847 ORTHO05D000385 5.1e-54 215.3 233 56.7
DCAR_005519 Daucus carota HOM05D024847 ORTHO05D000385 1.4e-35 154.1 156 57.1
SGA_v2.0_scaffold107G30768 Striga asiatica HOM05D004615 ORTHO05D000385 5.3e-19 99.0 90 56.7
DCAR_006099 Daucus carota HOM05D022224 ORTHO05D000385 9.1e-19 98.2 143 37.1
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 5.0e-17 92.4 159 35.2
DCAR_029837 Daucus carota HOM05D024847 ORTHO05D000385 8.5e-17 91.7 104 54.8
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 7.2e-16 88.6 67 52.2
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 7.2e-16 88.6 67 52.2
SGA_v2.0_scaffold251G45054 Striga asiatica HOM05D004615 ORTHO05D000385 1.2e-15 87.8 69 58.0
SGA_v2.0_scaffold279G46788 Striga asiatica HOM05D004615 ORTHO05D000385 1.6e-15 87.4 105 42.9
DCAR_029877 Daucus carota HOM05D004615 ORTHO05D000385 1.4e-14 84.3 71 46.5
DCAR_001516 Daucus carota HOM05D004615 ORTHO05D000385 1.2e-13 81.3 169 30.2
DCAR_032097 Daucus carota HOM05D004615 ORTHO05D000385 3.3e-13 79.7 67 46.3
Hund31150 Selenicereus undatus HOM05D004615 ORTHO05D000385 5.7e-13 79.0 71 52.1
SGA_v2.0_scaffold623G53232 Striga asiatica HOM05D004615 ORTHO05D000385 7.5e-13 78.6 67 53.7
EL10Ac1g01843 Beta vulgaris HOM05D009343 ORTHO05D011970 9.7e-13 78.2 169 33.1
Psat2g138520 Pisum sativum HOM05D009811 ORTHO05D007166 1.3e-12 77.8 73 52.1
AUR62014955 Chenopodium quinoa HOM05D008127 ORTHO05D000385 1.7e-12 77.4 72 48.6
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 2.2e-12 77.0 73 46.6
DCAR_031271 Daucus carota HOM05D022224 ORTHO05D000385 3.7e-12 76.3 155 34.2
Psat3g193080 Pisum sativum HOM05D004615 ORTHO05D000385 3.7e-12 76.3 73 50.7
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 4.8e-12 75.9 73 46.6
EL10Ac3g06149 Beta vulgaris HOM05D004615 ORTHO05D000385 6.3e-12 75.5 69 49.3
EL10Ac9g21235 Beta vulgaris HOM05D004615 ORTHO05D000385 6.3e-12 75.5 69 49.3
Hund15079 Selenicereus undatus HOM05D020107 ORTHO05D000385 8.2e-12 75.1 137 36.5
EL10Ac8g18984 Beta vulgaris HOM05D010065 ORTHO05D000385 1.1e-11 74.7 173 30.6
EL10Ac1g02022 Beta vulgaris HOM05D004615 ORTHO05D000385 1.8e-11 73.9 66 50.0
EL10Ac2g03424 Beta vulgaris HOM05D004615 ORTHO05D000385 1.8e-11 73.9 66 50.0
EL10Ac3g06255 Beta vulgaris HOM05D004615 ORTHO05D000385 1.8e-11 73.9 66 50.0
Psat7g230640 Pisum sativum HOM05D008859 ORTHO05D007166 2.4e-11 73.6 90 38.9
TPR.G7595 Trifolium pratense HOM05D008859 ORTHO05D007166 2.4e-11 73.6 68 45.6
Psat5g236880 Pisum sativum HOM05D008859 ORTHO05D007166 3.1e-11 73.2 69 42.0
Psat7g204000 Pisum sativum HOM05D008859 ORTHO05D007166 4.1e-11 72.8 69 42.0
EL10Ac2g03160 Beta vulgaris HOM05D004615 ORTHO05D000385 5.3e-11 72.4 72 38.9
Psat1g098040 Pisum sativum HOM05D009811 ORTHO05D007166 7.0e-11 72.0 73 47.9
EL10Ac2g02989 Beta vulgaris HOM05D004615 ORTHO05D000385 9.1e-11 71.6 138 30.4
EL10Ac7g17625 Beta vulgaris HOM05D004615 ORTHO05D000385 1.2e-10 71.2 130 33.8
Hund03726 Selenicereus undatus HOM05D004615 ORTHO05D000385 1.6e-10 70.9 77 48.1
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.0e-10 70.5 138 29.0
HanXRQChr02g0040071 Helianthus annuus HOM05D004615 ORTHO05D000385 2.0e-10 70.5 68 42.6
Psat5g270240 Pisum sativum HOM05D008859 ORTHO05D007166 2.7e-10 70.1 107 33.6
Sopen08g007140 Solanum pennellii HOM05D000107 ORTHO05D000570 3.5e-10 69.7 71 46.5
EL10Ac6g14405 Beta vulgaris HOM05D004615 ORTHO05D000385 4.5e-10 69.3 117 35.0
AUR62042512 Chenopodium quinoa HOM05D014060 ORTHO05D000385 4.5e-10 69.3 67 44.8
Solyc11g020843.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.9e-10 68.9 71 40.8
EL10Ac5g11873 Beta vulgaris HOM05D004615 ORTHO05D000385 7.7e-10 68.6 112 33.0
DCAR_029772 Daucus carota HOM05D004615 ORTHO05D000385 7.7e-10 68.6 51 52.9
TPR.G13785 Trifolium pratense HOM05D004615 ORTHO05D000385 7.7e-10 68.6 69 43.5
AUR62037964 Chenopodium quinoa HOM05D014060 ORTHO05D000385 1.0e-09 68.2 69 46.4
HanXRQChr04g0100871 Helianthus annuus HOM05D004615 ORTHO05D000385 1.0e-09 68.2 68 41.2
AUR62019804 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.3e-09 67.8 85 32.9
EL10Ac1g01725 Beta vulgaris HOM05D004615 ORTHO05D000385 1.7e-09 67.4 70 44.3
CAN.G637.27 Capsicum annuum HOM05D000229 ORTHO05D000385 1.7e-09 67.4 105 35.2
HanXRQChr09g0240121 Helianthus annuus HOM05D004615 ORTHO05D000385 1.7e-09 67.4 68 41.2
AUR62031351 Chenopodium quinoa HOM05D014060 ORTHO05D000385 2.2e-09 67.0 66 47.0
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 2.9e-09 66.6 158 27.2
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 3.8e-09 66.2 110 32.7
Hund12189 Selenicereus undatus HOM05D004615 ORTHO05D000385 3.8e-09 66.2 169 31.4
Ah.02g122150 Amaranthus hybridus HOM05D004615 ORTHO05D000385 5.0e-09 65.9 88 36.4
EL10Ac4g08049 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-09 65.9 110 32.7
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-09 65.9 110 32.7
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 5.0e-09 65.9 110 32.7
AUR62024348 Chenopodium quinoa HOM05D014060 ORTHO05D000385 5.0e-09 65.9 66 45.5
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 5.0e-09 65.9 114 34.2
Lj2g0009854 Lotus japonicus HOM05D008859 ORTHO05D007166 6.5e-09 65.5 114 31.6
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 8.5e-09 65.1 85 35.3
Lj4g0021021 Lotus japonicus HOM05D004615 ORTHO05D000385 8.5e-09 65.1 71 43.7
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-08 64.7 107 32.7
AUR62013324 Chenopodium quinoa HOM05D010065 ORTHO05D000385 1.1e-08 64.7 84 33.3
AUR62042816 Chenopodium quinoa HOM05D010065 ORTHO05D000385 1.1e-08 64.7 84 33.3
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 1.9e-08 63.9 110 31.8
AUR62010806 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.9e-08 63.9 158 29.1
Hund18471 Selenicereus undatus HOM05D020107 ORTHO05D000385 1.9e-08 63.9 52 57.7
EL10Ac5g11855 Beta vulgaris HOM05D004615 ORTHO05D000385 3.2e-08 63.2 110 31.8
AUR62033141 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.2e-08 62.8 71 35.2
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.2e-08 62.8 67 38.8
Psat0s2928g0040 Pisum sativum HOM05D009811 ORTHO05D007166 4.2e-08 62.8 65 47.7
Sopen03g010950 Solanum pennellii HOM05D008041 ORTHO05D000385 4.2e-08 62.8 71 39.4
SGA_v2.0_scaffold39G15343 Striga asiatica HOM05D004615 ORTHO05D000385 4.2e-08 62.8 66 47.0
AUR62035483 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.2e-08 62.0 91 33.0
Solyc08g016677.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.2e-08 62.0 71 42.3
EL10Ac6g14681 Beta vulgaris HOM05D010065 ORTHO05D000385 9.4e-08 61.6 56 46.4
EL10Ac9g22619 Beta vulgaris HOM05D004615 ORTHO05D000385 9.4e-08 61.6 122 32.8
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 9.4e-08 61.6 71 39.4
PGSC0003DMG400046364 Solanum tuberosum HOM05D007930 ORTHO05D007166 9.4e-08 61.6 110 31.8
EL10Ac3g06972 Beta vulgaris HOM05D010065 ORTHO05D000385 1.2e-07 61.2 56 46.4
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 1.2e-07 61.2 71 43.7
EL10Ac7g17419 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-07 60.8 160 25.6
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.6e-07 60.8 129 24.8
AUR62042361 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.6e-07 60.8 124 29.8
DCAR_032202 Daucus carota HOM05D022224 ORTHO05D012368 1.6e-07 60.8 101 37.6
Sc11g0005200 Simmondsia chinensis HOM05D014970 ORTHO05D019369 1.6e-07 60.8 72 41.7
EL10Ac9g20807 Beta vulgaris HOM05D004615 ORTHO05D000385 2.1e-07 60.5 56 46.4
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-07 60.5 103 35.0
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 2.7e-07 60.1 69 34.8
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.7e-07 60.1 71 38.0
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-07 60.1 71 38.0
COL.COLO4_08701 Corchorus olitorius HOM05D001309 ORTHO05D000385 3.6e-07 59.7 65 38.5
Nitab4.5_0000285g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.6e-07 59.7 72 33.3
AUR62041652 Chenopodium quinoa HOM05D010065 ORTHO05D000385 4.7e-07 59.3 95 34.7
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 4.7e-07 59.3 66 34.8
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 4.7e-07 59.3 66 34.8
TWI31G0781 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.7e-07 59.3 81 30.9
Nitab4.5_0000781g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.1e-07 58.9 68 33.8
Solyc05g150139.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 6.1e-07 58.9 78 39.7
AUR62018240 Chenopodium quinoa HOM05D010065 ORTHO05D000385 8.0e-07 58.5 61 39.3
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-07 58.5 71 36.6
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-07 58.5 71 36.6
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-07 58.5 71 36.6
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-07 58.5 71 36.6
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 8.0e-07 58.5 71 36.6
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-06 58.2 77 35.1
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 1.0e-06 58.2 69 34.8
Sopen04g010730 Solanum pennellii HOM05D008041 ORTHO05D000385 1.0e-06 58.2 103 33.0
EL10Ac1g02164 Beta vulgaris HOM05D004615 ORTHO05D000385 1.4e-06 57.8 55 45.5
MBI03_g15598_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-06 57.8 84 28.6
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.4e-06 57.8 77 35.1
Nitab4.5_0000188g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-06 57.8 83 32.5
Nitab4.5_0016483g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.4e-06 57.8 121 25.6
Sopen02g004250 Solanum pennellii HOM05D000004 ORTHO05D000385 1.4e-06 57.8 91 34.1
Thecc.09G100000 Theobroma cacao HOM05D001309 ORTHO05D000385 1.4e-06 57.8 73 37.0
COL.COLO4_36623 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.8e-06 57.4 65 38.5
Nitab4.5_0001199g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-06 57.4 68 32.4
Nitab4.5_0004695g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.8e-06 57.4 68 32.4
Nitab4.5_0007164g0020 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.8e-06 57.4 77 31.2
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 1.8e-06 57.4 71 36.6
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 1.8e-06 57.4 112 31.2
AUR62031247 Chenopodium quinoa HOM05D008455 ORTHO05D009597 2.3e-06 57.0 101 26.7
Nitab4.5_0001346g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.3e-06 57.0 73 31.5
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 2.3e-06 57.0 71 36.6
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 2.3e-06 57.0 109 29.4
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 3.0e-06 56.6 75 33.3
Nitab4.5_0002394g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.0e-06 56.6 68 33.8
Nitab4.5_0008635g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.0e-06 56.6 70 30.0
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.0e-06 56.6 65 38.5
AUR62004861 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.0e-06 56.2 60 43.3
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 4.0e-06 56.2 68 30.9
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-06 56.2 67 37.3
Hund10043 Selenicereus undatus HOM05D009682 ORTHO05D000385 4.0e-06 56.2 76 39.5
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-06 55.8 108 30.6
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.2e-06 55.8 66 36.4
Nitab4.5_0003082g0080 Nicotiana tabacum HOM05D001309 ORTHO05D000385 5.2e-06 55.8 68 32.4
RcHm_v2.0_Chr1g0322131 Rosa chinensis HOM05D005012 ORTHO05D005886 5.2e-06 55.8 65 33.8
Sopen04g011930 Solanum pennellii HOM05D007930 ORTHO05D007166 5.2e-06 55.8 70 35.7
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 6.8e-06 55.5 68 30.9
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 6.8e-06 55.5 71 33.8
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 8.8e-06 55.1 131 26.7
Nitab4.5_0003520g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.8e-06 55.1 68 30.9
Sopen01g007980 Solanum pennellii HOM05D007930 ORTHO05D007166 8.8e-06 55.1 83 36.1
Sopen10g014360 Solanum pennellii HOM05D007930 ORTHO05D007166 8.8e-06 55.1 83 36.1
Sopen12g015810 Solanum pennellii HOM05D007930 ORTHO05D007166 8.8e-06 55.1 68 35.3


User provided reference genes

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